Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0179 ATGGCTTCTAGTCCGCGCACCGTGGAGGAGATCTTCAAGGATTATAGTTCTCGAAGAGCCGGTGTTGTTCGTGCTTTGACTCAAGATGTGGATGAATTTTACGGGCTCTGTGATCCAGAAAAGGAGAACTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACCCTGCCAGCAGAGGAAGTGCCCCCAGAGCTTCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGAATCGCAGGGACTGGCTTTCTCTGGTTGCTGTCCACAGTGACTCATGGCTGCTTTCTGTGGCTTTCTATCTTGGAGCCCGCCTTAACCGCAATGAAAGGAAGCGCTTATTTAGCTTGATCAATGATCTTCCCACTGTCTTTGAAGTTGTGACTGAGAGAAAGCCTATAAAGGACAAGCCAACTGCGGACAGTGGAAGCAAGTCTAGGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAATCCAAAGTTTGCAGATGAGGGTTATGAGGAGGATGAAGATGAGCATAGCGAAACCCTTTGTGGGAGTTGTGGTGGAAATTACAATGCAGATGAATTTTGGATTGGCTGCGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGAAGATTACCCCGGCCAAGGCTGAGAGCATAAAGCAATATAAATGCCCATCCTGCGTGAGGAGGGGCAAGCCCTAG 711 0.4824 MASSPRTVEEIFKDYSSRRAGVVRALTQDVDEFYGLCDPEKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPIKDKPTADSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCVRRGKP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0179 236 SMART PHD_3 183 231 IPR001965 -
Dere12g0179 236 Pfam PHD-finger 184 232 IPR019787 -
Dere12g0179 236 SUPERFAMILY FYVE/PHD zinc finger 172 234 IPR011011 -
Dere12g0179 236 CDD PHD_AL_plant 183 233 IPR044104 -
Dere12g0179 236 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Dere12g0179 236 FunFam PHD finger alfin-like protein 176 232 - -
Dere12g0179 236 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Dere12g0179 236 MobiDBLite consensus disorder prediction 146 163 - -
Dere12g0179 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 231 IPR013083 -
Dere12g0179 236 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Dere12g0179 236 PANTHER CPG BINDING PROTEIN 4 232 IPR045104 GO:0006355|GO:0042393
Dere12g0179 236 MobiDBLite consensus disorder prediction 137 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0179 Dere-ChrDere12 3117866 3120699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0179 2 233 Alfin-like Transcription Factor Family AT5G05610 78.541 2.81e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Dere12g0179 Alfin 1.1e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0179 12 3117866 3120699 Dere11g0175 11 2940451 2943386 CCT
Dere11g0257 11 4788657 4789034 Dere12g0179 12 3117866 3120699 CCT