Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0147 ATGGAAGGAAGAAGCGAAGGCTCGGAATGTTCTAAAACGAGCCCTTCAAGTTATAATTGCAACAAATTAGAAGAAGCTTGCGAGAGCAAGAACGAGGCCAATGAAGAAGAAGAAGAAGAAGGAAGTAAGCAAAACATGAATAACAATGGAGGAAGCTCAAGCAATAGCACAGTGGAAGAGACTGATCAGAAGAAGACACCAGTGAGGCCTTATGTGAGATCCAAGATGCCAAGGCTTCGATGGACTCCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGGCTTGGAGGAGAAGAGAAAGCAACACCGAAGTTGGTTCTCCAATTAATGAACATCAAAGGCTTGAGTATTGCGCATGTTAAGAGTCATTTGCAGATGTATAGGAGCAAGAAGGTAGATGATCCAAGCCAAGTATTGGCTGATCATAGGCATCTTGTAGAAAGTGGAGACAGAAATATTTACAATCTCAGTCAACTTCCCATGCTTCAAGGTTATAATCCAAGCCAAAATCCAGCCATCAGATATGGATATGGAGATACTTCTCTGGGTGTCTATGACAAAATGGTTCAGGCACCATTCATGGGTCGGAGTCCAATAAATCTTAAACCCGGGTCAGCCGGGTTTCACAGCATTTTCCGGGTGGAAAACTCAAATTTTCTGAAACAATCATCAACAAGTAAAATCTATGAACCAAAGGATCATCAAGTTTTCTCATTTGGTGGATGCAATCAAACCAGATTGAGCCAGAATAATGATCTCAACCCATTGACCCATATAGAGCCAATAAGAGCACAAGAACAACTACTCATGCCCATTATGAAGGATCAAGAGCTAACAAAGACACTGAAAAGGAAGGCTTGTGATCATACGGATCATCACCTTGATTTGGATCTATCACTGAAGTTAAATTCTTCAAGGGTTGATATTGCGGAGAAGAATCATCAACCAAGTAATTTGGAGGAGAACGATGAAGTTGATAGCAATCTCTCACTCTCTTTGTACTCTCAATTTTCTTCCTCTTCGAATTATTATGTTAGAAGCAGGTCGAAGGAAGGAGAAGAACACTGTAATAAGGAGCTAGGAAGGAGGGAAGGGGCTAGTACTCTGGATCTGACTATATGA 1125 0.4124 MEGRSEGSECSKTSPSSYNCNKLEEACESKNEANEEEEEEGSKQNMNNNGGSSSNSTVEETDQKKTPVRPYVRSKMPRLRWTPDLHLRFVHAVQRLGGEEKATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVDDPSQVLADHRHLVESGDRNIYNLSQLPMLQGYNPSQNPAIRYGYGDTSLGVYDKMVQAPFMGRSPINLKPGSAGFHSIFRVENSNFLKQSSTSKIYEPKDHQVFSFGGCNQTRLSQNNDLNPLTHIEPIRAQEQLLMPIMKDQELTKTLKRKACDHTDHHLDLDLSLKLNSSRVDIAEKNHQPSNLEENDEVDSNLSLSLYSQFSSSSNYYVRSRSKEGEEHCNKELGRREGASTLDLTI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0147 374 MobiDBLite consensus disorder prediction 349 374 - -
Dere12g0147 374 SUPERFAMILY Homeodomain-like 75 131 IPR009057 -
Dere12g0147 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 133 IPR017930 -
Dere12g0147 374 MobiDBLite consensus disorder prediction 349 366 - -
Dere12g0147 374 Gene3D - 76 133 - -
Dere12g0147 374 Coils Coil 20 40 - -
Dere12g0147 374 Pfam Myb-like DNA-binding domain 79 129 IPR001005 -
Dere12g0147 374 NCBIfam myb-like DNA-binding domain, SHAQKYF class 77 132 IPR006447 GO:0003677
Dere12g0147 374 FunFam Myb family transcription factor 75 133 - -
Dere12g0147 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 52 244 IPR046955 GO:0003700
Dere12g0147 374 MobiDBLite consensus disorder prediction 44 61 - -
Dere12g0147 374 MobiDBLite consensus disorder prediction 8 24 - -
Dere12g0147 374 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0147 Dere-ChrDere12 1791298 1793171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0147 68 138 G2-like Transcription Factor Family AT2G42660 77.465 5.62e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere12g0147 Myb_DNA-binding 1.8e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0147 12 1791298 1793171 Dere12g0147 12 1791298 1793171 ECH