Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0145 ATGGAGCCTGAGATTCTTCATTCCTCATGGTCATTCAATGAAGGCATAACCTCAACTTTTGATCAGGTTGACTCTTATGGCTTCGACTTCGATGGTATGATGAGCGATGGTAGATTTAGTCCTCTGTTCGGTATTTCAGAGGATACTTCTACCATGTTGTCTAATGATAATTTCTGTGACCCACCTAATGAAGACACCCTTCAACTCCCGTCGTTGATGGAAGATTTCTCTATGGATCTTGATGCTTTTGATCCTACTCTGTGCTCCCATATTCTGGGAGTCCATGGATTCCCAGAAGAAAGTGCAGTAAGCTTTCCATCACAGAACTTGTCTTCTGAGGGAGAAGATGCTTGGAGTCGTAGCCCATCTATGAAATCAGACTTATCCACAGTAGTACTAGTGCAACCATCACTGACCTTGCCACAAGAAGACATGGAAATGGAGAACCAGTTGAGTCTTCCTCATCTTCTGGAGGCCATTGGAGAAGCCAAAGAGCAAGCACAAAACGCACTTGCACAAGTGATTCTGAGATGCATCAGCCACAAAGTAAGCCCCCTTGGTGACCCTCTGGAGCGTCTCGCATTCAATTTGTCCCAAAATCACGAGACCACAAACCAAGGGAATTTCATCAAACAAGAGGCGTGCAAGAACTTCAAGCAAATTTTCAGGATTTTCTACCAAGGCCTACCCCATGGGAAACTTGCACATTTCACAGCCAATTCAGCAATTCTAGAATCCATACCAGAGGATTCAGAAGTCATACACATAATAGACTTCGATATGGGAGAAGGGGTTCAATGGCCTCCAGTGATGGAGGCGATTGCCCACCAACACAAAACATTGAAACTAACGTCAATCAAATGGGAAGAAGAGGAGAGCCCTGAACCTGGTTCTGTTTCCACCCAATGGAAATTTGAAGAAGCTAAAAGAAACCTCTGTCAACAGGCCAGATCATGTGGTTTGGAATTGAAGGTGGAGGAAAAGGGTGTTGAGGAATTGGTGACAGAGCTCAAGAAATTGAGCAAAACGGGTGGAAATGGAAATAACGGAAAGAGAAATTTCTTGGCCTTCAATTGCATGGTGGGTCTTCCACATCAGGGGAGGGTAAGAAGTAGAAGACGTGTCCTGGAATTTTTAAGGGTAGCCAAGGATTTCATCCAAAGCTCATCTTCCAATAGGGGAATTATAGCTTTTGGTGATGGAGAAGCCTGCGACAAACTAAGAAATTGCATGAATTTCAGGTCATTCTTTGATGAAAATCTAATGCATTACCGTGCCTTGTTAGAATCAATTGAATCAAAATTCCCAAGTCGATTCTCGGAGACAAGAACAGCAATGGAATGTCTATTTGTGGCACCCTACGTGTCATCTCAGGGTTGGTTTCAGAAGTGGGAGGAGATAAGAGAAAATTGGCATCTTCATCCAGAAATTGGGTTAGAGGGTCCAAGTTTGAAGGAAGGGATCATAATGGAAGTCAAAGAATTGTTAAGAGAAAGTGAAGGATGGTATGAGGCAAAGATTGAAGGCAACAATGGCAACCAAATGGTTTTGAAATGGAAAGGAACACCACTAGTCAGAGTTTCAACTTGGAAAAATTAA 1599 0.4309 MEPEILHSSWSFNEGITSTFDQVDSYGFDFDGMMSDGRFSPLFGISEDTSTMLSNDNFCDPPNEDTLQLPSLMEDFSMDLDAFDPTLCSHILGVHGFPEESAVSFPSQNLSSEGEDAWSRSPSMKSDLSTVVLVQPSLTLPQEDMEMENQLSLPHLLEAIGEAKEQAQNALAQVILRCISHKVSPLGDPLERLAFNLSQNHETTNQGNFIKQEACKNFKQIFRIFYQGLPHGKLAHFTANSAILESIPEDSEVIHIIDFDMGEGVQWPPVMEAIAHQHKTLKLTSIKWEEEESPEPGSVSTQWKFEEAKRNLCQQARSCGLELKVEEKGVEELVTELKKLSKTGGNGNNGKRNFLAFNCMVGLPHQGRVRSRRRVLEFLRVAKDFIQSSSSNRGIIAFGDGEACDKLRNCMNFRSFFDENLMHYRALLESIESKFPSRFSETRTAMECLFVAPYVSSQGWFQKWEEIRENWHLHPEIGLEGPSLKEGIIMEVKELLRESEGWYEAKIEGNNGNQMVLKWKGTPLVRVSTWKN 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0145 532 Coils Coil 323 343 - -
Dere12g0145 532 ProSiteProfiles GRAS family profile. 144 531 IPR005202 -
Dere12g0145 532 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 138 524 IPR005202 -
Dere12g0145 532 Pfam GRAS domain family 155 531 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0145 Dere-ChrDere12 1754778 1756376 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0145 142 531 GRAS Transcription Factor Family AT5G66770 25.428 3.21e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere12g0145 GRAS 1.4e-39 CL0063