Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0142 ATGTGCACGGTGAGTTTTGATGTTGGGCTTACTGGTCATCACCGAGGAAAGTCTCATGGTTCTATTCAAGATTTGCATGATCAGCCTTTAGTAATTCAAAATAGCCACTGGGCTAGCCTACCCCTAGAATTGTTATATGATGTAATTAAAAGGTTAAAGGAGAGTGAGAGCACATGGCCTGCTCGAAAGCATGTTGTTGCGTGCGCTGTAGTTTGCCGGTCTTGGAGGAACATGTGCAAAGAAATTGTAAAGAGCCCAGAATTCTGTGGCAAGCTTACTTTCCCTATGTCCCTGAAGCAACCAGGGCCAAAAGATGGAATGATTCAATGTTTTATCACAAGAGATAAATCTAACTTAACATACCACCTATTCCTTTGTCTCAGCCCTGCTTTGTTAATTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACAAGAAGAACAACTTACACAAAGTATGTTATTTCCATGGATGCTGACAACATCTCAAGATCAAGTAGCACTTACATTGGAAAGTTAGGATCAAACTTTCTTGGTACAAAGTTCATAATATATGATACACATCCTCCATTCACTTCTGCCCATATACCCCCTCCTAGGACTGGGAGGACAAGCCGAAGGTTTTACTCCAAAAAGGTTTCGCCAAAGGTTCCATCTGCTTCCGCACTTGATATTGATGGCACAGTTCCTAACCAACCTGAGCTGCTTCCTTGCTCCCTTGAGGATTCGTTCTGTAGTATCTCCTTCTCAAAGTCTCTTGATCACTCTATTGAGTTCAATAATGCAAGATTTTCTGAGATTGGGGCATCCTGCAGTAACGAGGATGAGGAAGGCAAGATAAGACCCTTGATCCTCAAAAACAAACCTCCAATATGGCATGAACAATTGCAATGCTAG 897 0.4192 MCTVSFDVGLTGHHRGKSHGSIQDLHDQPLVIQNSHWASLPLELLYDVIKRLKESESTWPARKHVVACAVVCRSWRNMCKEIVKSPEFCGKLTFPMSLKQPGPKDGMIQCFITRDKSNLTYHLFLCLSPALLIENGKFLLSAKRTRRTTYTKYVISMDADNISRSSSTYIGKLGSNFLGTKFIIYDTHPPFTSAHIPPPRTGRTSRRFYSKKVSPKVPSASALDIDGTVPNQPELLPCSLEDSFCSISFSKSLDHSIEFNNARFSEIGASCSNEDEEGKIRPLILKNKPPIWHEQLQC 298
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0142 298 Gene3D Tubby Protein; Chain A 94 298 IPR025659 -
Dere12g0142 298 Pfam Tub family 98 298 IPR000007 -
Dere12g0142 298 Gene3D - 32 85 - -
Dere12g0142 298 PRINTS Tubby superfamily signature 153 169 IPR000007 -
Dere12g0142 298 PRINTS Tubby superfamily signature 169 193 IPR000007 -
Dere12g0142 298 CDD F-box_AtTLP-like 37 81 - -
Dere12g0142 298 PANTHER TUBBY-RELATED 23 298 - -
Dere12g0142 298 SUPERFAMILY Tubby C-terminal domain-like 86 298 IPR025659 -
Dere12g0142 298 SUPERFAMILY F-box domain 33 81 IPR036047 GO:0005515
Dere12g0142 298 FunFam Tubby-like F-box protein 32 85 - -
Dere12g0142 298 Pfam F-box domain 37 84 IPR001810 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere12g0142 Dere-ChrDere12 1690713 1691832 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0142 5 298 TUB Transcription Factor Family AT1G76900 57.895 1.29e-123 359
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere12g0142 Tub 1.2e-44 CL0395