Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0141 ATGGAGCCGGAGATCCTTCATTCCTCATGGTCCTTCTATGAAGGCATACGGTCAACTTTTGATCAAGATGAGTCTTATGACTTCAACGTGGATGCCCCTATGTTCACCACTACAGATGATACTTCTTCTGGGGTTTCCTCCATGAGTCCTTTTTCTTCTACAATGATCTCCAATGATCATCATATCTATTACCCAATTGATGAAGACACCCTTCATCTCCCATCGTTGATGGAAGATTTCTCTATGAATCTTGATGCTTTTGATCCCACTTTGAGCACCAATGTTCTGGGTGTCCATGGATTCCCAGAAGGAAGTGAAGGAAGCTTTCCATCACAGAACTTCTCTTCTGAAGGAGAAAATGCTTGGAGTCCTACTTTTTCCATGAAATCAGACTTATCCACAATAGTACATGTAAAGCCATCACTGACCTTACCACAAAAAGACATGGAAATGGAGAACCAGTTGAGTCTTCCTCATCTTCTGGAGGCCATTGGTGAAGCCATAGAGCAAGGACAGAACATACTTGCAGAAGTGATTCTGACATGCATCAGCCATAAAGTAAGCCCCCTTGGTGACCCTCTAGAGCGTCTCGCATTCAGTTTGTCCCAAAATACCGAGACCACAGACCAAGGGAATTTCATCAAACAGGAGGCGTGCAAGAATTTCAAGCAAATTTTTAAGACTTTCTACCAAGGCCTCCCACATGGAAAAATTGCTCATTTTACAGCCAATTCTGCAATTCTAGAATCCATACCAAAGGATTCAGAAGTGATACATATAATAGATTTTGATATGGGAGAAGGGGTTCAATGGCCTCCAGTGATGGAGGCCATTGCCCACCAACAGAAAACATTGAAATTAACATCAATCAAATGGGAAGAAGAGGAAAGCCCTGAACCTGATTGTGTTTCCACGCCATGGAAATTTGAAGAAACCAGAAGGAACCTCTATGAGCATGCCAGATCATGTGGTTTGGAATTCAAGGTGGAGGAAAAGGGTATTGAGGAATTGGTGGCGGAGCTCAAGAAATTGAGCAAAAGGGGTGGAAACGGAAATAACGGAAAGAGAAATTCCTTGGTCTTCAATTGCATGGTTGGTCTTCCACATATGGGGAGGGTAAGAAGTAGAAGACATGTCCTGGACTTTCTGAGGGTAGCCAAGGATTTCACGAAAAGCTTAACTTCCAATAAGGGAATTATAGCTTTTGGTGACGGAGAAGCCTATGACAAACTAAGAAATTGCTTGAATTTTAGGTCATTCTTTGATGGAAATCTGATGCATTACAATGCTTTGTTAGAATCAATTGAATCAAATTTCCCAAGTCGATTCTCAGAAGCAAGAACAGCAACGGAATGTGTCTTTGTGGCACCGTACGTGTCATCTCAGAGTTGGTTTCAGAAGTGGGAGGAGATGAGAGAAGATTGGCATCTTCGTTCAGAAATTGGGTTAGAGGGTCCAAGTTTGAAGGAAGGGATCATAATGGAAGTTGCAGAAATGTTGAGAGAAAGGGAAGGCTGGTACGAGGCTAAGATTGAAGGCAACAATGGCAACGAAATGGTTTTGGAATGGAAAGGAACGCAGCTTGTCAGAGTTTCAATTTGGGGAAATCAAAGCCTTGGTCTTTGA 1626 0.425 MEPEILHSSWSFYEGIRSTFDQDESYDFNVDAPMFTTTDDTSSGVSSMSPFSSTMISNDHHIYYPIDEDTLHLPSLMEDFSMNLDAFDPTLSTNVLGVHGFPEGSEGSFPSQNFSSEGENAWSPTFSMKSDLSTIVHVKPSLTLPQKDMEMENQLSLPHLLEAIGEAIEQGQNILAEVILTCISHKVSPLGDPLERLAFSLSQNTETTDQGNFIKQEACKNFKQIFKTFYQGLPHGKIAHFTANSAILESIPKDSEVIHIIDFDMGEGVQWPPVMEAIAHQQKTLKLTSIKWEEEESPEPDCVSTPWKFEETRRNLYEHARSCGLEFKVEEKGIEELVAELKKLSKRGGNGNNGKRNSLVFNCMVGLPHMGRVRSRRHVLDFLRVAKDFTKSLTSNKGIIAFGDGEAYDKLRNCLNFRSFFDGNLMHYNALLESIESNFPSRFSEARTATECVFVAPYVSSQSWFQKWEEMREDWHLRSEIGLEGPSLKEGIIMEVAEMLREREGWYEAKIEGNNGNEMVLEWKGTQLVRVSIWGNQSLGL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0141 541 ProSiteProfiles GRAS family profile. 148 535 IPR005202 -
Dere12g0141 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 142 528 IPR005202 -
Dere12g0141 541 Pfam GRAS domain family 159 534 IPR005202 -
Dere12g0141 541 Coils Coil 327 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0141 Dere-ChrDere12 1660082 1661707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0141 136 451 GRAS Transcription Factor Family AT5G66770 27.273 5.89e-17 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere12g0141 GRAS 3.2e-39 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0141 12 1660082 1661707 Dere12g0141 12 1660082 1661707 ECH