Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0129 ATGGGCGGTGGCTGCAGGAACAGGAAATCGCGGAAGAGAAGAAGAAGTGGGAGTGACTCTGTCGTAGACACTCTTGAGAAGTGGAAGAAGTACAACAGCGAGCTTGAATTTGTTAAAATTGGAGCAAAGAAAGCAGCTCACAAAACTCCAGCGAAGGGCTCCAAAAAGGGGTGTATGAAAGGCAAAGGTGGGCCTCAGAACTCAGATTGCAACTACAGAGGAGTACGGCAGAGGATTTGGGGCAAGTGGGTAGCTGAAATTCGTGAACCCATTAATGGAAATCATAGTAATGTGGGAAAAAAGAAGCCAAATCGGCTATGGCTTGGCACTTTCTCTACTGCACTTGAAGCTGCTCTTGCTTATGATGAAGCAGCCAGAGCCATGTATGGTCCTTGCGCTCGCCTGAACTTTCCTGACTATAATGTGGAAGAAGAAGAAACCACATCCTCTAATGAAGAAACAAAGGAGACAGAGGAAACAGAGAAGAAACATGAGGTTGATCTGGTGAAGGGTGAAGAAGAAACAGAGGAGGGGGAATGGAATCCGAGAGCTAATTGTGAAGATCTTAGTGTCATCCAAAGTGAAGCTTCCTTTGGGATGAAGCAGATGGATGAAGTGATTTCTGAGATTCTGGAATTTTGTAGCTCTGATCACTCTCAAAAAGTGGAATATAAAGCTTCTGATGGGAGAAACTTTGAAGTTGAGGATTTGAGCAATTCTGATAATGGAGAGTATATGATTGAAGAAAAAGAAGTTGATGGGTGGCAGAGTAGGAAGATGCCTGATCTATCTCAACACTTTCAGAAATTGAACGGTCATTTGCCTGTGTATCTGAATAATGGGAAGGAGGCAGATGTAGAAGTGGGTTATCATGATTATAGTTTCTTGAGACCTGATTATGACTTTGGCTTATTGGAAGAGAAGAACTTACTTAGTATATGGTTTCCACATACAGCTTCTTAG 963 0.4289 MGGGCRNRKSRKRRRSGSDSVVDTLEKWKKYNSELEFVKIGAKKAAHKTPAKGSKKGCMKGKGGPQNSDCNYRGVRQRIWGKWVAEIREPINGNHSNVGKKKPNRLWLGTFSTALEAALAYDEAARAMYGPCARLNFPDYNVEEEETTSSNEETKETEETEKKHEVDLVKGEEETEEGEWNPRANCEDLSVIQSEASFGMKQMDEVISEILEFCSSDHSQKVEYKASDGRNFEVEDLSNSDNGEYMIEEKEVDGWQSRKMPDLSQHFQKLNGHLPVYLNNGKEADVEVGYHDYSFLRPDYDFGLLEEKNLLSIWFPHTAS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0129 320 MobiDBLite consensus disorder prediction 1 15 - -
Dere12g0129 320 MobiDBLite consensus disorder prediction 153 181 - -
Dere12g0129 320 Pfam AP2 domain 70 130 IPR001471 GO:0003700|GO:0006355
Dere12g0129 320 MobiDBLite consensus disorder prediction 1 22 - -
Dere12g0129 320 Gene3D AP2/ERF domain 71 139 IPR036955 GO:0003700|GO:0006355
Dere12g0129 320 SMART rav1_2 71 144 IPR001471 GO:0003700|GO:0006355
Dere12g0129 320 MobiDBLite consensus disorder prediction 142 181 - -
Dere12g0129 320 FunFam Ethylene-responsive transcription factor 2 70 139 - -
Dere12g0129 320 SUPERFAMILY DNA-binding domain 71 139 IPR016177 GO:0003677
Dere12g0129 320 CDD AP2 70 139 IPR001471 GO:0003700|GO:0006355
Dere12g0129 320 ProSiteProfiles AP2/ERF domain profile. 71 138 IPR001471 GO:0003700|GO:0006355
Dere12g0129 320 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 8 242 - -
Dere12g0129 320 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Dere12g0129 320 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Dere12g0129 320 MobiDBLite consensus disorder prediction 46 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0129 Dere-ChrDere12 1596760 1597722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0129 11 150 AP2-EREBP Transcription Factor Family AT2G40340 52.448 4.37e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere12g0129 AP2 5e-14 CL0081