Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0121 ATGGTGCCGGAGACAACAAGTTTAAAGGACTTCCAGACAAGATGGAAGGATAAGTACCCTTATACTACCCAAACTCTCTTTGGGTTGTGGGCTTATGACACAATTCAAGCATTGGCCATTGCAGTAGAAGAGGCTGGCATTGTCAGTTCGACCTTTCACAAGCCTAATATTGGCAATAAGGGCGTTGTTGATCCTGCAGATATAGAAATGCATGGCACGGGCCCCAAACTTCTCAATACAATTGAGGCCACTAATTTCATAGGCGTGTCAGGCAATTTCAGTTTAGCTGGAGGACAGTTAGAACCATCTATACTTGAAGTGTACAATGTGATAGGACAAAGAGAAAGGATCATTGGATTTTGGAGCCCTCAAAGAGGACTTATCCAAAATATTAGTGATCAATATGAGGAGCCAAGTGGGAAGGACAGATTGAAGTTACCATTGTGGCCAGGGGACACCACGGAGAAACCAACGAAGCTGAGAATTGGGGTCCCAGTAAAAGAAGATTTCACTGAATTTTTGAAAGTAGAAAGAGGATCTCGAAGTAGTAAGCCATATATTTTTGGTTTTGCTTTTCAAGTGTTTTTAAAAGCGGTTGATGTTTTACCATTTCCTCTATCTTTTGAGCTTGTCCCCTTGACGAAGAAAAATGGAGTGACTGCCGGAAACTATGATGATCTTCTTTGCAATATTAAACAGAAGAAGCTTGATGCAATAATTGGAGACATTACAATTTTAGCAAATCGCACAAAATGTGTTGATTTCACAATGCCATATTTAGAATCAAGCGTGTCAATGATGGTTGCGATGAGGTCTTTTCATAGCAAGTGGGTCCTCCTGGAACCTTTCAATTGGTTACTTTGGCTAATTCTTGGTGGGATATTTGTGGGAGCAACTTTTATTATCATTATATTAGAAAGAAGTAAGAACAAAAATGATGTGGTCAGGAAGGTAAAATTCAACGAAATGGTCAAGTTTCCCTTCTCTATATACACTAGCGATAACAAGGAACTGGCAAGCAGTTTGTCACGATGGATGGTGATACTGACCTCATTTCTATTCATCATAGTAGTGCAAGTTTACACTGCGAATTTGACGTCCATCTTAACAGAAGGGACAGAGCTAAAGCCCGCATACAAGGACGTAGAAGTGATTAAAAGGAAAAACTTGTCGGTGGGATATCAGAGGGAATCCTGGGTGAAAAGGCTTCTAGTTGAACAAATAGGATTGAAAGAGACTCAGTTGAAGCCTTTAGGCACTCGTGAGCAGTATAGTTATGCATTATCAAAAGGAAGCGAAAATGGAGGTGTGGCTGCTATTTTTGATGAAACCCCATATCTTATGCTCTTCCTTTCCGAGTCTAGATATGGCTCTGTCTATGGGATGTCAGGACCAATCTACACAACTGGTGGATTTGGCTTTGCGTTCCAACAAAAATCTAATCTAGTGTCGTACTTTTCGACTGCAATCTTAAATGTGACTCAAGATGTGGACACATTTTATGCCCTCAAGAACAAGTACTCCTTACCCACCACCATTGATGCCACCTCCGGATACCCGAAAGCTTCAGAGAAGCGAAGCTTGATTATTACTGACTTTGGAGGCCTTTTCCCATTAGTATTGTACATTTTAGGTCTCTTCTTTAGCCTTGCAATTCTTAAAACATCAACGGTGATTAACGTTTTGCCTCCGGGATTCAGAGGTATGTTGACCAGAGTGGCTAAGTTAGTTCGGGCTTAA 1740 0.4092 MVPETTSLKDFQTRWKDKYPYTTQTLFGLWAYDTIQALAIAVEEAGIVSSTFHKPNIGNKGVVDPADIEMHGTGPKLLNTIEATNFIGVSGNFSLAGGQLEPSILEVYNVIGQRERIIGFWSPQRGLIQNISDQYEEPSGKDRLKLPLWPGDTTEKPTKLRIGVPVKEDFTEFLKVERGSRSSKPYIFGFAFQVFLKAVDVLPFPLSFELVPLTKKNGVTAGNYDDLLCNIKQKKLDAIIGDITILANRTKCVDFTMPYLESSVSMMVAMRSFHSKWVLLEPFNWLLWLILGGIFVGATFIIIILERSKNKNDVVRKVKFNEMVKFPFSIYTSDNKELASSLSRWMVILTSFLFIIVVQVYTANLTSILTEGTELKPAYKDVEVIKRKNLSVGYQRESWVKRLLVEQIGLKETQLKPLGTREQYSYALSKGSENGGVAAIFDETPYLMLFLSESRYGSVYGMSGPIYTTGGFGFAFQQKSNLVSYFSTAILNVTQDVDTFYALKNKYSLPTTIDATSGYPKASEKRSLIITDFGGLFPLVLYILGLFFSLAILKTSTVINVLPPGFRGMLTRVAKLVRA 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0121 579 Pfam Ligand-gated ion channel 508 538 IPR001320 GO:0015276|GO:0016020
Dere12g0121 579 Gene3D - 1 100 - -
Dere12g0121 579 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 5 552 IPR015683 -
Dere12g0121 579 SUPERFAMILY Periplasmic binding protein-like II 155 506 - -
Dere12g0121 579 Gene3D - 278 401 - -
Dere12g0121 579 SMART GluR_14 159 508 IPR001320 GO:0015276|GO:0016020
Dere12g0121 579 Gene3D - 154 277 - -
Dere12g0121 579 Pfam Bacterial extracellular solute-binding proteins, family 3 223 507 IPR001638 -
Dere12g0121 579 SUPERFAMILY Periplasmic binding protein-like I 2 122 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0121 Dere-ChrDere12 1507069 1509326 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0121 2 544 Ion Channels AT2G24710 34.099 5.48e-91 298