Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0108 ATGGGAAATTGTTGCAGTCACGATGTTCCGTGTCAATATTCAATGGAAAATGACGTAGATGAGGCAGAATTTGAGCGTGGAGAAGACCATATTACCACCCATGGTGAAAATGAAGGACGAGTCAGGCTGAGAGGATACTCTAGGTTTGTGTCCATGTACAGCCAGCAGGGAGGAAAAGGTGTCAATCAAGATGCAATGACAGTTTGGGAGGACTTCACTGGAGAAAAAGATATGATCTTTTGTGGTGTGTTCGATGGTCACGGTCCTCTTGGGCATATGGTTGCACATTATGTACGTAAACATTTGCCCTCAAAACTTTGTGCAGCAATCAAAATGTCACAGAAGAAGCTCTGCAACTATGACGATGCTAATGCTGCAGATGGTGAACATAACCAAAAGATGTCCCTTGCTTCATGGGAGAATTGCTTTCTGAAATCCTTCAATGAGATGGATGAAGCCATTGCTCGGGACATTAACATCGACAGCTTTTACAGTGGTAGCACTGCTGTAACTGTAGTCAAACAGGGTGACCAGCTGATTATTGGCAATGTGGGAGATTCTCGTGCGGTTCTTTGCACAAGAGGAGCTAGAGACCAACTTGTTCCTCTTCAACTTACTGTTGACTTGAAGCCAGATATTCCTCGTGAAGCTGAAAGAATCTGTAGCTGTGACGGCAGAATTTTCGCTGAAGATGATGAGCCTGATGTGTACAGAATATGGATGCCTGAGGAAGACTGCCCTGGACTAGCTATGTCAAGAGCCTTTGGAGACTTTTGCCTAAAGGATTATGGCCTCATCTCTGTTCCTGATGTCTGCTATCGAAAAGTATCCAAGCAGGATGAATTTGTGGTTTTGGCAACTGATGGGGTTTGGGATGCGCTGACAAATGATGAAGTAATAGAGATAGTTGCTTCAGCACCAAAGAGGTCCGTAGCAGCAAAATTGTTAGTAAGGTGTGCTGTCCGGGCGTGGAAGTACAAATTTCCTGGTTCCAAGGTTGATGATTGTGCAGCCATATGCTTATTCCTGAAAGACCAGCCAGTCTCAAACGATTTTGGGGAAAACAGACATGAAAGGAAGCATGGCTATAAATCTAATAGAATTGAAGACAACAAGAGAGTCGGTGATACAGAATCAAAGGACAAATGGGAAGCTCTTAAAGGGTTATCCAGAGCCAATTCTATATCAAAATTTCCAAGGCTCACTTGGGATTTGAGTAGGCGGCATCCATCTCAGTTGCTTGAAGGTGTTGAAGTTCGCTAG 1263 0.4402 MGNCCSHDVPCQYSMENDVDEAEFERGEDHITTHGENEGRVRLRGYSRFVSMYSQQGGKGVNQDAMTVWEDFTGEKDMIFCGVFDGHGPLGHMVAHYVRKHLPSKLCAAIKMSQKKLCNYDDANAADGEHNQKMSLASWENCFLKSFNEMDEAIARDINIDSFYSGSTAVTVVKQGDQLIIGNVGDSRAVLCTRGARDQLVPLQLTVDLKPDIPREAERICSCDGRIFAEDDEPDVYRIWMPEEDCPGLAMSRAFGDFCLKDYGLISVPDVCYRKVSKQDEFVVLATDGVWDALTNDEVIEIVASAPKRSVAAKLLVRCAVRAWKYKFPGSKVDDCAAICLFLKDQPVSNDFGENRHERKHGYKSNRIEDNKRVGDTESKDKWEALKGLSRANSISKFPRLTWDLSRRHPSQLLEGVEVR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0108 420 SUPERFAMILY PP2C-like 43 345 IPR036457 -
Dere12g0108 420 PANTHER PROTEIN PHOSPHATASE 49 341 IPR015655 GO:0004722|GO:0006470
Dere12g0108 420 SMART PP2C_4 38 341 IPR001932 -
Dere12g0108 420 Pfam Protein phosphatase 2C 73 317 IPR001932 -
Dere12g0108 420 CDD PP2Cc 48 343 IPR001932 -
Dere12g0108 420 Gene3D - 44 346 IPR036457 -
Dere12g0108 420 ProSiteProfiles PPM-type phosphatase domain profile. 49 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0108 Dere-ChrDere12 1388087 1390441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0108 1 367 PP2C-type Phosphatase Gene Family AT5G01700 50.272 5.90e-124 362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0108 12 1388087 1390441 Dere11g0096 11 1557580 1560746 CCT
Dere12g0108 12 1388087 1390441 Dere12g0108 12 1388087 1390441 ECH