Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0081 ATGTCTTCTAGAGACCGAAAAAAAGCTGCACGCAAGTTACAGCACCTTCGAGCCGTCACAAATTCCAGTGCTGTGAATAAAGCCTCAATTATTGTGGATGCTTCCAAATACATAGAGGAGTTGAAGCAAAAAGTGGAGGGACTGAACGCAGAACTTGGAAGCAGTATTACTGAATCATCTTCAACCTCCCAAAATCAATTACCTATGGTAACAGTGGAAACCCTAGAAAGGGGATTTCTGATTAATGTGTTTTCAGAAAGGAATTGCCCTGGAATGCTGGTTTCAATACTCCAAGCCTTTGGAGAGATTGGACTTGAAGTGCTCGATGCTAGGGTTTCTTGTGAAGACGCCTTTCAGCTAGAAGCTGTGGGAGGAGAAAGTCAAGAGAATGAGAGCATAGACGCACAAGTGGTGAAGCAAGCGGTGCTTCAAGCAATAGAGGGCATGGAGTAA 453 0.4415 MSSRDRKKAARKLQHLRAVTNSSAVNKASIIVDASKYIEELKQKVEGLNAELGSSITESSSTSQNQLPMVTVETLERGFLINVFSERNCPGMLVSILQAFGEIGLEVLDARVSCEDAFQLEAVGGESQENESIDAQVVKQAVLQAIEGME 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0081 150 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 146 - -
Dere12g0081 150 Coils Coil 31 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0081 Dere-ChrDere12 915254 916522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0081 4 126 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 29.677 1.66e-09 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0081 12 915254 916522 Dere12g0081 12 915254 916522 ECH
Dere12g0081 12 915254 916522 Dere05g0831 05 13818608 13819801 ECH
Dere04g1946 04 22282411 22284078 Dere12g0081 12 915254 916522 ECH
Dere12g0081 12 915254 916522 Dere04g1946 04 22282411 22284078 ECH