Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0072 ATGTGCTTAAAAGTCGAAAACTCCTTCTCTGAGGTTAATAAGGGAAAAGCTGCTTTTGAGCTGCCTTTGTTCATCCTTGATGAGATTGGATGTTTAAATCACTGCCTATGTCTATTCTGTGCTCAAGTGCCTGATGTGGATAGGAATCTAAGCGGCCATTTGATGTCAAAATATGATGTCTGTGAAGATGAAATGGAACCAAAGGGAGGTGTGCTGATGCAGCGATATGAACTAGGGAGATTATTAGGCCAAGGAACCTTTGCAAAGGTCTACTATGCAAGGAACCTTGTTACTGGCATGAGTGTGGCCATTAAGGTAATTGATAAAGAGAAGATTTTGAAAGTTGGGATGATTGATCAAATTAAGAGAGAAATATCTGTAATGAGACTAGTTAGACATCCACATGTGGTTGAGCTTTATGAGGTAATGGCCAGTAAAACCAAGATCTACTTTGTCATGGAATATGCAAAAGGTGGTGAACTCTTCCATAAGGTAGCCAAAGGAAAGCTGAAGGAGGATGTTGCCAGAAGATACTTTCAGCAACTGATAAGTGCTGTTGACTACTGCCATAGCAGAGGTGTGTGTCATCGAGATCTAAAACCAGAAAATCTATTATTAGATGACAATGGGAATTTGAAGGTCTCAGATTTTGGGTTGAGTGCTCTTGCTGAATCTAAGCACCAAGATGGCTTACTTCATACTACATGTGGTACCCCTGCCTATGTTGCACCAGAAGTGATAAACAGAAAAGGTTATGATGGATCCAAAGCTGATATATGGTCATGTGGGGTGATCTTGTATGTTTTATTGGCTGGTTATCTTCCTTTTCATAACTCAAATATGATGGAGATGTATAAGAAGATTGGTAAGGGGGAGTTCAAATTTCCTAGCTGGTTTGCGCCAGATGTACGCCGGTTGTTGTCCAAAATCTTGGATCCTAATCCAAACACCAGGATATCAATGACCAAAATTATGGAAAGTTCTTGGTTCAGAAAGGGATTAGAGAAGCATGTCATTCCTGAGACCGAAGAGAATGAACTGGCTCCTTTGGATGCTGATGGAGTATTTGGAGCTTGTGAGAATGGCAGTGGTCCTGCTGCAGAGACAAAACAAGAACTGACCAAACCTAGTAATTTGAATGCTTTTGACATCATCTCCTTTTCTGCAGGTTTTGACTTGTCTGGCCTGTTTGAGGAGACTGATCGCAAAAAAGAGGTGCGGTTTACATCAAACAAGCCATCCTCAATTATCATCTCTAAGTTGGAAGAAATTTGTAAGCGTCTTCGACTGAAAGTGAAGAAGAAAGATGGAGGTTTGTTCAAGTTGGAGGGTTCCAAGGAAGGCAGGAAAGGAACTTTGGGTATTGATGCTGAAATCTTTGAGATCACCCCACTATTCCATATGGTCGAGTTTAGAAAGTCCAGTGGAGATACATTGGAGTACCAGAAGCTTCTGAAACAGGACATTAGACCAGCACTTAAAGACATAGTTTGGACCTGGCAAGGAGAACAACCTCAGCAATTTCCGCAACAAGTAGTGCAGATGGAGCAACAGCCTTCTCATGCTGCCCAGTTTGAGATAGTAACACAATCAACTTCGTGA 1602 0.4145 MCLKVENSFSEVNKGKAAFELPLFILDEIGCLNHCLCLFCAQVPDVDRNLSGHLMSKYDVCEDEMEPKGGVLMQRYELGRLLGQGTFAKVYYARNLVTGMSVAIKVIDKEKILKVGMIDQIKREISVMRLVRHPHVVELYEVMASKTKIYFVMEYAKGGELFHKVAKGKLKEDVARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDDNGNLKVSDFGLSALAESKHQDGLLHTTCGTPAYVAPEVINRKGYDGSKADIWSCGVILYVLLAGYLPFHNSNMMEMYKKIGKGEFKFPSWFAPDVRRLLSKILDPNPNTRISMTKIMESSWFRKGLEKHVIPETEENELAPLDADGVFGACENGSGPAAETKQELTKPSNLNAFDIISFSAGFDLSGLFEETDRKKEVRFTSNKPSSIIISKLEEICKRLRLKVKKKDGGLFKLEGSKEGRKGTLGIDAEIFEITPLFHMVEFRKSSGDTLEYQKLLKQDIRPALKDIVWTWQGEQPQQFPQQVVQMEQQPSHAAQFEIVTQSTS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0072 533 CDD STKc_SnRK3 75 329 - -
Dere12g0072 533 FunFam Non-specific serine/threonine protein kinase 374 498 - -
Dere12g0072 533 FunFam Non-specific serine/threonine protein kinase 66 352 - -
Dere12g0072 533 FunFam Non-specific serine/threonine protein kinase 67 155 - -
Dere12g0072 533 Gene3D Transferase(Phosphotransferase) domain 1 156 357 - -
Dere12g0072 533 CDD CIPK_C 380 494 - -
Dere12g0072 533 ProSiteProfiles NAF domain profile. 374 398 IPR018451 GO:0007165
Dere12g0072 533 SUPERFAMILY Protein kinase-like (PK-like) 72 331 IPR011009 -
Dere12g0072 533 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Dere12g0072 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Dere12g0072 533 Gene3D Kinase associated domain 1, KA1 374 499 - -
Dere12g0072 533 Gene3D Phosphorylase Kinase; domain 1 67 155 - -
Dere12g0072 533 Pfam Protein kinase domain 76 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0072 533 ProSiteProfiles Protein kinase domain profile. 76 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0072 533 Pfam NAF domain 376 434 IPR004041 GO:0007165
Dere12g0072 533 SMART serkin_6 76 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0072 533 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 71 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0072 Dere-ChrDere12 755504 757212 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0072 65 506 CBL-interacting serine-threonine protein kinases AT5G58380 68.352 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Dere12g0072 Pkinase 1.4e-76 CL0016