Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0068 ATGTTTCAGGCCTTACGAGAGATGCACAGGACGGCCGTTCTTGAAGAAAAAGCAAAGTCGAGGTCTTCGGCCAAGGAAGAGGCACCGGACGCACCGGAGGGGGTGTTGTTCGGAAAATACGAGATACGTCGGTTTCTGGGCTTGGGAGGCTTCGCTAAGGTGTACGAAGCTACCAATGTGAGTACGAAGCAGAGCGTGGCTATCAAGATCGTGAGCAAGCGCGACATAATGGAACGTGGCCTTACGGCGCAGGTCGAGAGGGAAATAGCTATTATGCGCCGATTGCGCCATCCCCACATCGTCGAGCTCTACGAGGTCCTCGCCACCAAGACCAAGATTTACCTCGTCATGGAGTTCGCAAAAGGCGGAGAGCTCTTCGAAAAACTCGTTAACAAGGGACCCTTCTCAGAAGATCTCAGCCGTCGCTACTTCCAACAGTTAATCTCGGCCGTCCAATATTGCCATGCCAACGGCGTGTTTCACCGCGATATAAAGCTCGATAACTTATTACTCGACGAGGATTTGAACCTCAAGGTTTCGGACTTCGGGTTGAGCGCCTCTAAGGAGAAGATCCGACCGGAAAGGATGCTCCAAACTCTGTGTGGGACCCCCGCATACTTGGCTCCCGAGATGCTCACGAACAAAGGCTACGACGGAACGAAAAGTGATGTGTGGTCGTGCGGCGTCGTTTTGTTCGTTCTCAACGCCGGCTTTTTGCCGTTCAACGATCCCAACGTCATCGTGATGTTTAGGAAAATCTACCGAGGCCAGTTTCGGTTTCCCTCATGGATCTCACCCGGTTTGAAACGGTTTATATCCCGCTTGCTCGACCCGAACCCGAATACGAGGATCACCGTCAATGAGATCCTGCGACACCCGTGGTTCAGAAATGGGTACAAGAAGATCGAAATGGACCAGAGGGATCCGAAACGTGAGCACGGTTATATAACCAAGAGCTTGAACGCCTTCCATTTGATATCGTTCTCGTCGGGTTGCGACATATCGGGTTTGTTGGTGGCCGACCCGGAGTTTTCGGACAGTGTGGAACGCATCCTTTCAGGGGAGTCGCCGGAGAGGATAATGGCCGTGGCGGAGGAGGTGGCGGTGCCGGAGAGAGTGACGGTGACGAGGAATGGGAATGGGTGCGGAGCGAAGTTGGAGGGCCAGAACGGTAATTTGGTGATCTGGATGACTGTTTACCGTTTAACGGATGAGCTGATTGTGATTGAGGTAAACAAAAGGGAAAAAGGAGGAGGAAGTGGTGCAAACTTCTGGAGAGATAAATTGAGACCGAGGTTATTAGAATTAGTTCATAAACCGGAAGCGCCGGTCATTAGGTGA 1341 0.5213 MFQALREMHRTAVLEEKAKSRSSAKEEAPDAPEGVLFGKYEIRRFLGLGGFAKVYEATNVSTKQSVAIKIVSKRDIMERGLTAQVEREIAIMRRLRHPHIVELYEVLATKTKIYLVMEFAKGGELFEKLVNKGPFSEDLSRRYFQQLISAVQYCHANGVFHRDIKLDNLLLDEDLNLKVSDFGLSASKEKIRPERMLQTLCGTPAYLAPEMLTNKGYDGTKSDVWSCGVVLFVLNAGFLPFNDPNVIVMFRKIYRGQFRFPSWISPGLKRFISRLLDPNPNTRITVNEILRHPWFRNGYKKIEMDQRDPKREHGYITKSLNAFHLISFSSGCDISGLLVADPEFSDSVERILSGESPERIMAVAEEVAVPERVTVTRNGNGCGAKLEGQNGNLVIWMTVYRLTDELIVIEVNKREKGGGSGANFWRDKLRPRLLELVHKPEAPVIR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0068 446 Gene3D Transferase(Phosphotransferase) domain 1 122 318 - -
Dere12g0068 446 FunFam Aurora kinase A 34 123 - -
Dere12g0068 446 Pfam NAF domain 318 376 IPR004041 GO:0007165
Dere12g0068 446 FunFam CAMK family protein kinase 35 326 - -
Dere12g0068 446 ProSiteProfiles Protein kinase domain profile. 40 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0068 446 Gene3D Kinase associated domain 1, KA1 319 439 - -
Dere12g0068 446 SUPERFAMILY Protein kinase-like (PK-like) 36 309 IPR011009 -
Dere12g0068 446 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Dere12g0068 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 33 413 - -
Dere12g0068 446 CDD CIPK_C 321 431 - -
Dere12g0068 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Dere12g0068 446 SMART serkin_6 40 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0068 446 Gene3D Phosphorylase Kinase; domain 1 37 121 - -
Dere12g0068 446 ProSiteProfiles NAF domain profile. 315 339 IPR018451 GO:0007165
Dere12g0068 446 Pfam Protein kinase domain 40 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0068 Dere-ChrDere12 718143 719483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0068 35 442 CBL-interacting serine-threonine protein kinases AT2G30360 53.976 1.17e-154 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Dere12g0068 Pkinase 1.7e-72 CL0016