Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0067 ATGGTGGTTTCTCCTCAAACTTTTCCTTCCCGAAAACGACGACCCTCGGCGGGGTCGTTTATCTCGCCGAGACTCGCAGAACTCGACCTCCTTCACTCTCTGCTGCACCTGACCCGTGAGATTTCCTCGCTCCAACCCATCCAATTCCTCCTGAAACGTAATTCCTCTTCCATCATTCGCAAAGCCACTCTCCTCAGCGTTCTCTTCGAAGAGCTCATTCGAAGTTCCAATTCTCTTTCCTCTCAATCTGTCATGCTGTGTTTCGAGGAAATGTACATAGTTTTACAGAGAGTCAAGACCTTGATCGAAGATTGCTCCAGCGGAAGCAAGATGTGGCTATTGATGCAAAACGAATCGATCGCCGATACTTTTCACAAACTCACCGCGGACTTGTCGACGCTGTTGGATATCTTTCCGGTGAAGGAACTCGAATTAAGCGACGACGTTCGAGAGCTTGTGATTCTGATTAGAAAACAGTGCTCTGAATCGAAGGCTTTTGTGGATCCAAAAGACAACGAACTCAGGCATGAGGTGATCACCTTGCTTGATCGTATTAAGCAAGAGATCGTCCCCGATCACTCGAAGCTCGCAGATATCTTCGAGAGGTTGGAAATCCGAGATTCTTCGAGTTGCAGAGCGGAGATTGAGAGTTTGGAGGAGGAGATTCACGGTCGGAACGATGAGCAATCGAAATCCGACATTGTCGCTTTGATCGGACTCGTCCGATACGCGAAATGCGTTCTCTTTGGAGCTTCGACGCCGTCCCCTTCTTCCTCCGATGTGCAGCGGCGGAAACAGCCATCGGAGATCGTTGTTCCGGCGGATTTCAGGTGTCCGATTACTCTCGAGCTCATGCGGGACCCGGTTGTCGTGGCAACGGGACAGACGTACGATCGTGAGTCCATCAAACTCTGGTTCGAATCAGCGCACAACACGTGTCCAAAGACCGGTCAGACCCTGGCCCACACTGACGTCATCCCAAACCGTGCTTTGAAGAATCTAATAGCCTTGTGGTGCCGTGAGCAAAAAATCCTATTTGAAACCGCGGGAAGTAACGAGAAAGTTAACGGCGTTATTATTAGCAAAGCCGCCTTGGAAGCTACTAGAATGACGGCGTCATTCTTAGTCAACAAATTGTCTCTTTCTTCTTCCATGGAAGCCACAAACGCAGTCATTTATGAGCTTCGTGTGCTGGCTAAAACAGACTCCGATAGCCGAGCCTGCATAGCCGAAGCCGGAGCCATCCCTCTTTTAGTTCGCTACCTGAGTTTCCACGTCGGCTCACCAAATCCAAACCTACAAGTTAACGCCGTGACGACGATCCTCAATCTCTCCATCCTCGAGGCGAACAAAACGAGGATCATGGAGACTGACGGAGCGTTAAACGGCGTCATCGAGGTGCTTCGCTCTGGTGCCACGTGGGAGGCGAAGGCCAATGCAGCAGCCACAATATTCAGCTTATCAGGTGTCCACTCGTATAGAAAGAGACTAGGGAGGAAGACACGTGTCACTCAGGGGTTGATTGACCTCGCAAGGTGTGGGCCCACAGGTGCCAAGAGGGATGCTTTGGTGGCAATTTTGACTCTCGCGGCGGACAGAGAGACGGTGGCCAGGTTGGTGGAAGGTGGGGTGGTGGAGATGACGGCGGAAGTGATGGACGGGTTGCCAGAAGAGGCGGTGACGATTCTTGAGATGGTGGTTAAGCGGGGTGGGTTCGTGGCCGTCGCCGCCGCCTACAGCAGCATTAAGAAATTGCGAGCTATATTAAGGGAAGGTTCCGACAGGGCCAGGGAGAGTGCGGCGGCAACACTGGCCACAATGTGTCGGAAGGGAGGATCGGAGATAGTGGCGGAGCTGGCCTCCTCGCCGGGAATTGAAAGAGTGATATGGGAATTGATGGCAGTTGGGACTATAAGAGGGAGAAGAAAAGCCGCCACGTTGTTGAGGATTCTCCGGCGATGGGCCGCGGGATTGGACGGCGGAGGCTTAACGGAAGGATATTCAGCTACCATCACCTCGTCAACAACAATGGTTTCAACGCAATAG 2046 0.5215 MVVSPQTFPSRKRRPSAGSFISPRLAELDLLHSLLHLTREISSLQPIQFLLKRNSSSIIRKATLLSVLFEELIRSSNSLSSQSVMLCFEEMYIVLQRVKTLIEDCSSGSKMWLLMQNESIADTFHKLTADLSTLLDIFPVKELELSDDVRELVILIRKQCSESKAFVDPKDNELRHEVITLLDRIKQEIVPDHSKLADIFERLEIRDSSSCRAEIESLEEEIHGRNDEQSKSDIVALIGLVRYAKCVLFGASTPSPSSSDVQRRKQPSEIVVPADFRCPITLELMRDPVVVATGQTYDRESIKLWFESAHNTCPKTGQTLAHTDVIPNRALKNLIALWCREQKILFETAGSNEKVNGVIISKAALEATRMTASFLVNKLSLSSSMEATNAVIYELRVLAKTDSDSRACIAEAGAIPLLVRYLSFHVGSPNPNLQVNAVTTILNLSILEANKTRIMETDGALNGVIEVLRSGATWEAKANAAATIFSLSGVHSYRKRLGRKTRVTQGLIDLARCGPTGAKRDALVAILTLAADRETVARLVEGGVVEMTAEVMDGLPEEAVTILEMVVKRGGFVAVAAAYSSIKKLRAILREGSDRARESAAATLATMCRKGGSEIVAELASSPGIERVIWELMAVGTIRGRRKAATLLRILRRWAAGLDGGGLTEGYSATITSSTTMVSTQ 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0067 681 FunFam RING-type E3 ubiquitin transferase 358 546 - -
Dere12g0067 681 Gene3D - 25 141 IPR036537 GO:0007166
Dere12g0067 681 SUPERFAMILY ARM repeat 374 651 IPR016024 -
Dere12g0067 681 PANTHER U BOX DOMAIN-CONTAINING 37 652 - -
Dere12g0067 681 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 413 459 IPR000225 GO:0005515
Dere12g0067 681 Gene3D - 368 657 IPR011989 -
Dere12g0067 681 FunFam RING-type E3 ubiquitin transferase 268 345 - -
Dere12g0067 681 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 349 IPR013083 -
Dere12g0067 681 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Dere12g0067 681 Pfam U-box domain 272 343 IPR003613 GO:0004842|GO:0016567
Dere12g0067 681 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Dere12g0067 681 Pfam Armadillo/beta-catenin-like repeat 403 445 IPR000225 GO:0005515
Dere12g0067 681 SMART arm_5 402 446 IPR000225 GO:0005515
Dere12g0067 681 CDD MLKL_NTD 52 141 - -
Dere12g0067 681 CDD RING-Ubox_PUB 273 325 IPR045210 -
Dere12g0067 681 SUPERFAMILY RING/U-box 271 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0067 Dere-ChrDere12 683470 685515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0067 9 657 U-box Gene Family AT5G01830 60.643 0.0 766