Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0060 ATGGAGATTCACTGGCTTTTGTTGTTCCTTCTTCTCACTTTGATTCCTAATGGCATCTTCGCCGACCAATACGGTGTCTGGCAGAGTGCTCATGCCACATTCTATGGCGGCAACGATGCTTCTGGCACTATGGGAGGAGCATGTGGGTATGGAAACTTGATAAGCCAAGGCTATGGAACTAACACTGCAGCACTAAGCACAACACTGTACAACAATGGCCTCAGCTGTGGAGCTTGTTACGAGCTGCGTTGCGACAATGATCCACAGTGGTGTCTTCCTGGCACCGTCACTGTCACTGCAACTAACTTCTGTCCTCCAGATAACAATGGCGGATGGTGCAATTCCCGTCATCTACACTTCGATTTGGCTGTTCCTGCTTTCACTCGCATTGCCCAGTACAAGGCTGGAATCGTTCCTGTGCTCTTCAGAAGCGTGGCATGCGTGAAGAAAGGAGGCATGAGGTTCACCATAAATGGACACTCCTACTTCAACTTGGTCCTGATAGCAAATGTGGGAGGAGCAGGAGACGTACGAGAAGTTTCCATCAAAGGGTCGAGAGGAGGGTGGGAATCCATGTCAAGAAACTGGGGTCAGAATTGGCAGTCTAATTCATACCTGGATGGCCAGACACTGTCCTTCAGGGTTACCACCAGTGATGGTCGAACCATTACAAGTTACAACGTGGTTCCTGCCGGCTGGCAGTTTGGACAAACCTTTGAAGGTGCTCAATTTTAA 735 0.4939 MEIHWLLLFLLLTLIPNGIFADQYGVWQSAHATFYGGNDASGTMGGACGYGNLISQGYGTNTAALSTTLYNNGLSCGACYELRCDNDPQWCLPGTVTVTATNFCPPDNNGGWCNSRHLHFDLAVPAFTRIAQYKAGIVPVLFRSVACVKKGGMRFTINGHSYFNLVLIANVGGAGDVREVSIKGSRGGWESMSRNWGQNWQSNSYLDGQTLSFRVTTSDGRTITSYNVVPAGWQFGQTFEGAQF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0060 244 CDD DPBB_EXPA_N 27 147 - -
Dere12g0060 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 152 IPR007112 -
Dere12g0060 244 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Dere12g0060 244 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Dere12g0060 244 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Dere12g0060 244 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Dere12g0060 244 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Dere12g0060 244 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Dere12g0060 244 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Dere12g0060 244 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Dere12g0060 244 PRINTS Expansin signature 227 243 IPR002963 GO:0009664
Dere12g0060 244 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
Dere12g0060 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Dere12g0060 244 Gene3D - 17 147 IPR036908 -
Dere12g0060 244 SUPERFAMILY Barwin-like endoglucanases 8 170 IPR036908 -
Dere12g0060 244 SMART dpbb_1 62 142 IPR007112 -
Dere12g0060 244 Gene3D - 152 244 IPR036749 -
Dere12g0060 244 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Dere12g0060 244 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Dere12g0060 244 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Dere12g0060 244 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Dere12g0060 244 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Dere12g0060 244 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Dere12g0060 244 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Dere12g0060 244 FunFam Expansin 152 244 - -
Dere12g0060 244 Pfam Lytic transglycolase 62 141 IPR009009 -
Dere12g0060 244 PANTHER EXPANSIN-A15 12 244 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0060 Dere-ChrDere12 603781 604771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0060 3 244 Expansin Gene Family AT2G40610 67.742 7.56e-123 347