Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0053 ATGCATCGCCGTCTTCTCGACGCCGAGCTAAGTATGCCTCCGGCATATGGGAACAAGACCCGCGAATCGTTCCCGAGCGATGCGGACTTCGACGCGAACATGGTGATTATATTGGCGGCTCTTTTGTGCGCATTAGTATGCGCGCTCGGGTTGAACTCGATTGTGCGATGCGCGATGCGTTGCAGCCGAAGATTTTCCCCAGAGACCACAGAACAAACGGCTGCTAGGCTTGCCTCGAAGGGCCTGAAGAAACGTCACCTGAGTCAGATTCCGGTGAAGGTGTACGGGTCCGGCGTGAATATTCCTGCGACGGAGTGCCCGATTTGCCTCGGAGAGTTCGAGAAAGGAGACAAGGTGCGAATGCTGCCAAAATGCAATCACGGGTTCCATGTGAGGTGCATAGACACATGGCTCCTCTCACATTCATCTTGCCCCAATTGTCGCCATTCGCTTTTCGAGAAATCCACTAATTCTAATTCAAACCCTAGGACCCAAGGAGGAGGAGGCGCCGCCCGAGCTCGGACGCCGGAAAACGAGCCCGGCGACCGGCAAGGCAACGTTGTGGTGGTCGTCGAGCAGGCAAGTTGA 588 0.5578 MHRRLLDAELSMPPAYGNKTRESFPSDADFDANMVIILAALLCALVCALGLNSIVRCAMRCSRRFSPETTEQTAARLASKGLKKRHLSQIPVKVYGSGVNIPATECPICLGEFEKGDKVRMLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLFEKSTNSNSNPRTQGGGGAARARTPENEPGDRQGNVVVVVEQAS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0053 195 SMART ring_2 106 147 IPR001841 -
Dere12g0053 195 SUPERFAMILY RING/U-box 88 155 - -
Dere12g0053 195 CDD RING-H2_EL5-like 105 148 - -
Dere12g0053 195 MobiDBLite consensus disorder prediction 154 187 - -
Dere12g0053 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 158 IPR013083 -
Dere12g0053 195 PANTHER RING-H2 FINGER PROTEIN ATL78 22 160 IPR044602 GO:0016567|GO:0016740
Dere12g0053 195 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Dere12g0053 195 Pfam Ring finger domain 105 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0053 Dere-ChrDere12 515524 516111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0053 1 152 C3H Transcription Factor Family AT3G10910 57.764 1.90e-57 177
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0053 12 515524 516111 Dere12g0053 12 515524 516111 ECH