Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0052 ATGAGGTGCTTCTCTGTCTTGAAGAGTAAGAAGAAAAAGTCCAAACAGATCATCGAAGTAAGACATGTCAACTATAAAGAGCATGTAACTACTGTACTGCCTGAACCTCAAATTCATACTCGGTCACTGCAGTCTGCACCTCCTAGTTTTAAGATGAGAGTAAAACCCATTCAACCTGTTAATAAAGTCACAAACAACAGAATACGAGCATTATCTGCTCCATCGACTCTTGATGCAGCTGAACAAGATACTTTGGTGTCAGTCGAGTATGAGGAACAAGAAGAGTCAAAACACCGAGCTGGATTGATGAAGGAGCAACGTTCATCCAGTCCACAACCTTTACCTCTCCCATCACCTCAGGGTGCTGGTGCATTGAAGGCTACTAGTAGCTTTAAGTCAGGGACCGCTAGTGGTCCTCTATATGCTTCTGGACCTTTGCCGCTGCCACCTACTGGGTCAATTCGAAACTTCCTGTATGAGGAAATTGCTGCTGCTTGCCACAATTTCTCTTCAGACCGATATCTGTCAGAAAGTCTTTCTTCTACCATGTATAAAGCTTCCTTTGGTGATGATGCTTCAAGTTCAAAGAATTTTGAAGCCACTGTCACTCGCCTTCACCCTTCAACACAGGGCTTGAAGGAATTCATACACGAAGTTAACACTCTTTCATCGTTGCAACATCCAAACCTCTGCAAATTGCTAGGTTATCATGCCCGTGAGGGTTCAGAACAGAGAATGTTGGTTTATGAGAGGCTCTGTCATGGAAGCTTGGACCGTTTGTTGTATGGGAGATCTGATGGCCCACCTCTTGATTGGAATACAAGGATGAAAATTGCTTTGTGTGCTGCCCAAGGTCTTACTTTCTTGCATGAAGAAGGACCTTTCCAGGCAATGTATAATGAGTTTTCAACAGCCAATATACAGATTGACAAAGATTTCAGCGCAAAGCTTTCAGGATATGGTTGTGTTGGACATATTCCTGAAGAAGAGATTCCAAGCAGTTCTTCTGCTGTGGGAAACCTTTCAGTGGAGACACTGGAAAGACGATTGCTCACTCCAAAGAGCAACGTTTGGAGTTTTGGAATTTTTCTTCTGGAGCTACTTACTGGAAGAAAAAATCTGGACAGCCGTCACTCCAAGGAAGAGAGGAATTTAGTCAAGTGGAGCAGGCCCTTCCTAGCTGACGATTGTCGACTGTCATTGATCATGGATCCTCAACTTAAAGGTCGCTTTCCTTCCAAAGCAGCAAGGACAGTAGCTGATATTGCACTAAGGTGCCTCCAGAAGGAGCCATCAGAAAGACCCACCATGAGAACTGTTGTTGAGCATCTGAAAATGATACAGGATATGAAGTACTCTTGTCGGTTTCCTTTGCAAGAGCCTGCAGCAATTTCCGGAAAACAAATGTCAAGATCTCCAAGTCTTAATGGCATCATCTGTCCCCAGCCTAGATTGAGTTTCTCTCCATCACCACCGCCATCAGGAACACAACCATCTAGCTCCCCTCCAAGATGGTCTGGTGTGCCCATCTTGCTTCCCTCTCGAGGGTGTTCCTCCATTCTCTCTTTGGAGGAGTTTGATCGGCAGTTAAGCCAGAAGTCGTCTTCCTCAGCGTCTAGGAGGGCTAGTGTTGAAGGATATTGA 1644 0.4489 MRCFSVLKSKKKKSKQIIEVRHVNYKEHVTTVLPEPQIHTRSLQSAPPSFKMRVKPIQPVNKVTNNRIRALSAPSTLDAAEQDTLVSVEYEEQEESKHRAGLMKEQRSSSPQPLPLPSPQGAGALKATSSFKSGTASGPLYASGPLPLPPTGSIRNFLYEEIAAACHNFSSDRYLSESLSSTMYKASFGDDASSSKNFEATVTRLHPSTQGLKEFIHEVNTLSSLQHPNLCKLLGYHAREGSEQRMLVYERLCHGSLDRLLYGRSDGPPLDWNTRMKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEIPSSSSAVGNLSVETLERRLLTPKSNVWSFGIFLLELLTGRKNLDSRHSKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPSKAARTVADIALRCLQKEPSERPTMRTVVEHLKMIQDMKYSCRFPLQEPAAISGKQMSRSPSLNGIICPQPRLSFSPSPPPSGTQPSSSPPRWSGVPILLPSRGCSSILSLEEFDRQLSQKSSSSASRRASVEGY 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0052 547 PANTHER OS01G0588500 PROTEIN-RELATED 106 448 - -
Dere12g0052 547 MobiDBLite consensus disorder prediction 528 547 - -
Dere12g0052 547 Pfam Protein tyrosine and serine/threonine kinase 193 444 IPR001245 GO:0004672|GO:0006468
Dere12g0052 547 ProSiteProfiles Protein kinase domain profile. 169 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0052 547 MobiDBLite consensus disorder prediction 481 510 - -
Dere12g0052 547 Gene3D Phosphorylase Kinase; domain 1 150 250 - -
Dere12g0052 547 MobiDBLite consensus disorder prediction 485 499 - -
Dere12g0052 547 MobiDBLite consensus disorder prediction 90 126 - -
Dere12g0052 547 SUPERFAMILY Protein kinase-like (PK-like) 148 456 IPR011009 -
Dere12g0052 547 MobiDBLite consensus disorder prediction 90 104 - -
Dere12g0052 547 Gene3D Transferase(Phosphotransferase) domain 1 252 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0052 Dere-ChrDere12 504274 507057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0052 148 448 Receptor kinase-like Gene Family AT4G02010 39.216 7.29e-57 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Dere12g0052 PK_Tyr_Ser-Thr 4.9e-25 CL0016