Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0046 ATGCAATTAAGCCATTTCCTGTTTCTTCTTTTCTCTCCAATATTAGTAATCTCTACCGACCCAGTGTTCAACGACGACGTCTTGGGGTTGATTGTGTTCAAAGCGGGTCTAGAAGACCCGAAAGGTAAACTCACTAGTTGGAACGAGGATGATGACAGTCCCTGCAATTGGGTCGGGGTCAAATGTGACCCGACAACCAATCGGGTCTCCGCTTTAGTCCTTGACGGGTTTTCTCTTTCTGGGCATATTGATCGAGGACTCTTGAGATTACAGTGCCTTCAAGTTCTATCGCTTTCCAGAAACAACTTCACAGGGACCATAAACCCTGATGTTCCTCGCCTTGGGAATTTACAAGTAATTGATTTGAGCGAGAACAATCTCTCTGGATCAATCCCACAAGAATTTTTCCAGCAATGTGGGTCCTTAAGAGCAGTTTCATTTGCCAAAAACAATCTTTCGGGTAAAATTCCTGATTCTATAAGCTATTGCTCTATGTTAGCAACAGTTAACTTCTCCTATAATCAGCTTTATGGAGAATTACCATCTGGAATATGGTATTTGAGAGGATTGCAGTCACTTGATCTGTCAAATAACTTGCTAGAGGGAGAGATCCCTGAGGGAATTGAGAATTTGAATGATTTGAGAGAGTTAAGTCTACAGAAGAATCGATTTATCGGCAGGCTTCCTGGGGATATTGGAGGTTGTTTGCTCTTGAAATCACTTGATTTTAGTCAAAATTTTCTCTCTGGGAGACTTCCTGAGTCAATGCAGAGACTCAGCTTATGCACATCACTCAGTTTACAAGGAAATTCATTGACAGGAGGCATTCCTGGTTGGATTGGAGAATTGAAAAATCTGGAGATATTGGACCTTTCTGCAAATAGATTTTCGGGTTGGATTCCTAAATCAATAGGAAATCTTGATTCACTGAGTAAATTAAATCTATCAAGGAACCAACTGACAGGAAGCTTGCCAGAGTCAATGAGCAATTGCACTAAGCTCTTGGCTCTTGACATCAGCCACAACAAGTTATCAGGCCATCTTCCTTCATGGATTTTTAGGATGGGTTTACAAAGTATCTCGCTTTCAGGGAACAGTTTCACTAGGAGCAATAATCCCTCGCTTACTTCCACACCCACATCTTATCATGGCCTCGAGGTTTTGGATTTGTCATCCAATGCGTTTTCTGGTGATCTTCCATCAAGCATTGGGGGTCTCAGTACCTTGCAAGTCGTAAATTTGTCAACCAATTATATTGTTGGTGCTATTCCAGTGAGTATAGGAGAACTTAAATCTTTGTATATTCTTGACTTAAGTGACAACAAGCTTAATGGAAGCATTCCTTCGGAAATAGAAGGGTTGATTTCGCTCAGTGAACTGAGACTACAGAAGAATTTCCTTAGTGGCAGAATTCCAGCCCAAATTGAGAAGTGTTCATCCCTGACATCTTTGAATCTTTCTCACAACAAGCTTACTGGTTCAATCCCTTCAGCCATTGCAAACCTAACCAATCTTCAGCACATAGACTTGTCAAGGAACGAACTCTCTGGAAGCTTACCAAAGGAGCTGACAAATCTTTCCCACCTTTTCTCCTTCAATGTCTCCTACAACCACCTTCATGGTGAACTACCGGTGGGTGGCTTCTTCAATACTATCTCTCCTGCATCCGTCTCTGCTAATCCATTGTTATGTGGTTCCATTGTCAATCACTCCTGCCCATCCGTCCATCCCAAACCAATTGTCCTCAACCCCAATTCTTCTGGCTCCAATTCTGGCAGTTCCTCTCAAAACCGTCATCATAAGAAGGTCATTCTCAGTATCTCTGCCTTTATTGCTATTGGTGCTGCTGCTTTTATCGCTATTGGTGTGATGGCTGTTACTGTCCTAAATATCCATGTACGTTATTCAATGTCACATTCTGCTGCTCCATTTGCATTTTCTGGTGGTGAAGACTATAGTTGTTCACCCCCGAATGATCCAAATTATGGCAAACTTGTAATGTTTTCGGGTGATGCTGAATTTGCTGATGCGGCCCTTAATCTTCTCAATAAAGACAATGAGATTGGTCGTGGTGGATTTGGAGTTGTTTATCACATTGTCCTTCGAGACCGGCATTCGGTTGCAATCAAGAAGCTTACAGTCTCCAGCTTGGGTAAGTCCCAAGAAGACTTTGAGAGTGAAGTGAAAAAGCTTGGGAAGATGAGGCACCTGAATCTTGTGGCACTTGAAGGTTACTACTGGACTTCATCCTTGCAGCTTCTTATCTATGAATACCTATCCCGAGGGAGTTTACATAAGCTTCTACATGGTGAAAATAGCAATGACACCCTTTCATGGCAACAAAGGTTCAAGATTATTCTTGGCATGGCAAAAGGGTTGGCCCATTTGCACCAAATGAACATAATCCACTACAATCTAAAATCAACAAATATTCTAATAGACTGCTCTGGTGAGCCAAAAATAGGAGATTTTGGCTTGGTGAGGCTATTGCCAATGCTAGATCATTGTGTTTTGAGCAGCAAGGTTCAGAGTGCACTTGGATACATGGCTCCTGAGTTTGCCTGTCGCACAGTGAAGATAACTGAGAAATGTGATGTATATGGTTTTGGGATCCTAGTTCTGGAAGTAGTGACAGGAAAAAGACCCGTGGAATATATGGAGGATGATGTGGTTGTTCTCTGTGACATGGTAAGGGGTTCACTGGAGGAAGGAAAGGTTGAGCAATGTGTTGATGTGAGGCTTCTGGGAAATTTTGCTGCAGAGGAAGCAATTCCTGTGATTAAATTGGGGTTAATTTGTGCTTCACAAGTGCCATCAAACCGTCCAGACATGGCTGAGGTGGTCAACATATTAGAGTTGATCCAATGCCCTTCAGAAGGACAAGAGGAATTAGAATGA 2898 0.4231 MQLSHFLFLLFSPILVISTDPVFNDDVLGLIVFKAGLEDPKGKLTSWNEDDDSPCNWVGVKCDPTTNRVSALVLDGFSLSGHIDRGLLRLQCLQVLSLSRNNFTGTINPDVPRLGNLQVIDLSENNLSGSIPQEFFQQCGSLRAVSFAKNNLSGKIPDSISYCSMLATVNFSYNQLYGELPSGIWYLRGLQSLDLSNNLLEGEIPEGIENLNDLRELSLQKNRFIGRLPGDIGGCLLLKSLDFSQNFLSGRLPESMQRLSLCTSLSLQGNSLTGGIPGWIGELKNLEILDLSANRFSGWIPKSIGNLDSLSKLNLSRNQLTGSLPESMSNCTKLLALDISHNKLSGHLPSWIFRMGLQSISLSGNSFTRSNNPSLTSTPTSYHGLEVLDLSSNAFSGDLPSSIGGLSTLQVVNLSTNYIVGAIPVSIGELKSLYILDLSDNKLNGSIPSEIEGLISLSELRLQKNFLSGRIPAQIEKCSSLTSLNLSHNKLTGSIPSAIANLTNLQHIDLSRNELSGSLPKELTNLSHLFSFNVSYNHLHGELPVGGFFNTISPASVSANPLLCGSIVNHSCPSVHPKPIVLNPNSSGSNSGSSSQNRHHKKVILSISAFIAIGAAAFIAIGVMAVTVLNIHVRYSMSHSAAPFAFSGGEDYSCSPPNDPNYGKLVMFSGDAEFADAALNLLNKDNEIGRGGFGVVYHIVLRDRHSVAIKKLTVSSLGKSQEDFESEVKKLGKMRHLNLVALEGYYWTSSLQLLIYEYLSRGSLHKLLHGENSNDTLSWQQRFKIILGMAKGLAHLHQMNIIHYNLKSTNILIDCSGEPKIGDFGLVRLLPMLDHCVLSSKVQSALGYMAPEFACRTVKITEKCDVYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGSLEEGKVEQCVDVRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEVVNILELIQCPSEGQEELE 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0046 965 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 676 758 - -
Dere12g0046 965 PRINTS Leucine-rich repeat signature 502 515 - -
Dere12g0046 965 PRINTS Leucine-rich repeat signature 481 494 - -
Dere12g0046 965 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524
Dere12g0046 965 SUPERFAMILY Protein kinase-like (PK-like) 681 955 IPR011009 -
Dere12g0046 965 SMART LRR_typ_2 307 331 IPR003591 -
Dere12g0046 965 SMART LRR_typ_2 430 453 IPR003591 -
Dere12g0046 965 SMART LRR_typ_2 211 235 IPR003591 -
Dere12g0046 965 SMART LRR_typ_2 114 138 IPR003591 -
Dere12g0046 965 SMART LRR_typ_2 187 210 IPR003591 -
Dere12g0046 965 SMART LRR_typ_2 332 355 IPR003591 -
Dere12g0046 965 SMART LRR_typ_2 502 525 IPR003591 -
Dere12g0046 965 SMART LRR_typ_2 526 550 IPR003591 -
Dere12g0046 965 SMART LRR_typ_2 479 501 IPR003591 -
Dere12g0046 965 SMART LRR_typ_2 283 306 IPR003591 -
Dere12g0046 965 SMART LRR_typ_2 454 478 IPR003591 -
Dere12g0046 965 Pfam Protein kinase domain 683 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0046 965 SUPERFAMILY L domain-like 41 372 - -
Dere12g0046 965 SMART LRR_sd22_2 283 309 - -
Dere12g0046 965 SMART LRR_sd22_2 430 456 - -
Dere12g0046 965 SMART LRR_sd22_2 382 408 - -
Dere12g0046 965 SMART LRR_sd22_2 187 213 - -
Dere12g0046 965 SMART LRR_sd22_2 502 528 - -
Dere12g0046 965 SUPERFAMILY L domain-like 283 554 - -
Dere12g0046 965 Pfam Leucine rich repeat 480 539 IPR001611 GO:0005515
Dere12g0046 965 Pfam Leucine rich repeat 384 443 IPR001611 GO:0005515
Dere12g0046 965 Pfam Leucine rich repeat 263 320 IPR001611 GO:0005515
Dere12g0046 965 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 303 576 - -
Dere12g0046 965 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Dere12g0046 965 ProSiteProfiles Protein kinase domain profile. 682 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0046 965 Gene3D Ribonuclease Inhibitor 23 298 IPR032675 -
Dere12g0046 965 Pfam Leucine Rich Repeat 190 211 IPR001611 GO:0005515
Dere12g0046 965 Gene3D Phosphorylase Kinase; domain 1 662 758 - -
Dere12g0046 965 ProSiteProfiles Leucine-rich repeat profile. 480 503 IPR001611 GO:0005515
Dere12g0046 965 CDD STKc_IRAK 688 954 - -
Dere12g0046 965 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 24 302 - -
Dere12g0046 965 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 759 960 - -
Dere12g0046 965 Gene3D Ribonuclease Inhibitor 299 575 IPR032675 -
Dere12g0046 965 Gene3D Transferase(Phosphotransferase) domain 1 759 963 - -
Dere12g0046 965 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 325 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0046 Dere-ChrDere12 455919 458953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0046 7 962 Receptor kinase-like Gene Family AT5G01890 61.746 0.0 1132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Dere12g0046 Pkinase 3.9e-42 CL0016