Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0024 ATGGATCAACTCACCACCACGGCGACGGGTTTCAAGCTCCCACTTGTTGTTTCTCACGTTTTATTCCTCTCAACTTCTCAAGTTATTGGGATGCTGGGTCCGAGATTATATGGATATGTCTTGGCTATTTCGTTTTGTTATTTCATTCTCACAGCTGCCACACAACGAACAGATCCTTCGGAAGTGAAGGCACTAGTACAAATCAACAAAAGTTTGATTGATCCCATGGGCCATCTGAGGAACTGGAATAAGGGAGACCCATGTACATCAAACTGGACTGGGATTTGGTGTTTTGATAGGGTCAGCCCTGATGGATACTTCCATATCCGTGAGCTTTACTTAATGACTATGAATCTCTCGGGAAGTCTAGCACCTCAGCTCGGTCAGCTATCTCAACTTCGAATAATGAATTTCATGTGGAATGATCTGACAGGCACAATACCAAAGGAGATTGGAAGTATCAAATCATTGAAACTCTTACTCCTGAATGGCAATAAGTTATCAGGTACTTTACCTGATGAGCTTGGCAATCTCTCAAATTTGAATAGGCTCCAAGTCGACGAAAACCAATTCTCAGGTCGAATACCACAATCATTTGCCAACTTGATCAATGTTAGACACCTCCACTTGAACAACAACTCATTTATTGGTCAAATTCCACCTGAGCTTTCAAAGCTTTCCAATCTTCTGCACTTGCTTCTGGACAACAATGACTTATCTGGATATCTTCCGCCAGAATTTTCCATGTTACAGGGGTTGCGCATACTTCAACTTGATAACAATAATTTCAGCGGAGCTGAAATTCCTTCTACCTATGCAAACTTATCAAGACTAGCAAAACTAGGTCTTAGAAACTGCAGTTTGCAAGGAGCTGTTCCTGATCTCAGCTCAATAAGGAAGCTTAGCTATTTAGATCTTAGCTGGAATCATCTTTCTGGACCGATACCGCCAAAGAAACTTGCAAATAATATTACAACTATTGATCTGTCCAATAATAATATCAACGGATCTATTGCTGAAAGCTTCACATTACTTCCTTTCCTCCAAAGACTGTCACTTGAGAACAATTTCTTGTCTGGGCCCATCCCTGATAGTATATGGCTCAACATGTCCTTTAGTCCGAGTGCTAAACTCACAGTTGATCTCCGTAATAACTCATTTTCAGACATTTTGGGAAGTCTAAATCCACCAGCAAATGTCACCTTGAGGCTTGCTGGCAATCCTATCTGCAAGAATTCTAACATGCACAATATTGGTCAATACTGTGGACCTGAAGGACTTGATGATGACAAATCAACGAATTCCAAATCTGTCTGTCTGATTCAAGCTTGTCCAGTGGATAATTTCTATGAATATGTCCCAGCATCTCCTGTTCACTGCTTTTGTGCAGCACCTCTGAGAATTGGATACCGGCTTAAAAGCCCAAGTTTCTCTTACTTTCCTCCTTATAGAACTCCTTTTGAGTTATATATTACTCATTCTTTAAACTTGGACCAGTACCAATTATCAGTAGATTCATATGCTTGGGAAGAGGGACCTCGTCTTAGGATGTATTTGAAAATTTTTCCCAAGTTCGTTGATTCCCACTCTAATCTGTTCAATACAAGTGAGGTCCATCGCATTGAAGACATATTTGCATCATGGGAGTTTCCTCCCACTGATTTTTTTGGACCGTATGAACTCCTGAACTTCACTCTTCTTGGACCTTATGCAAATATAATTGTTGAGTCAGATAGGAGGAAACTCAATACAGCTGTGTTAGCAGTTGCCATAATTGCAGCTATTGCTGGTGTTATGGCAATCTCTGCAATATTCACTTTCGTGATAGCCAGAAGACATGTCAGATATCGCCCCAAGATATCAAGGAATCGTATGTCCTCTAATATTTCTATAAAAATAGATGGTGTAAAAGCATTCACTTTTAAAGAATTGGCTCTTGCCACTGGCAATTTTAGTAGCTCAACTGAAGTTGGCCAAGGAGGTTATGGGAAGGTTTATAAAGGCACTCTGTCTGATAAAACAATTGTGGCCATAAAGCGGGTAGAAGAAGGTTCCTTACAAGGCCAAAAAGAATTTTTGACTGAGATTGAACTTTTATCAAGGTTGCATCATCGAAACCTAGTCTCATTGATTGGATACTGTGATGAAGATGATGAGCAGATTCTGGTTTATGAATTTATGCCTAATGGTACCTTGCGGGAGTGGATTTCTGGTAAAAGGAAGGGAAACCTAAATTTTGGTATGAGGTTGCAGTTTGCATTGGGTGCAGCCAAAGGCATACTTTATCTCCATACTGAGGCTAACCCTCCTATATTCCACCGAGACATTAAGGCCAGCAACATACTTCTGGACGGCATGCTTATAGCTAAAGTGGCTGATTTTGGACTATCGCGTCTTGCACCATACCTGGATGATGAAGGAACTGTGCCTAAATATGTGTCAACTGTTGTTAGGGGAACACCAGGTTACGTGGATCCAGAGTACTTTTTGACTCGTAAGTTAACAGACAAAAGTGATGTCTATAGCCTGGGAATTGTGTTTCTGGAGCTTTTGACAGGCATGCAACCAATATCACATGGAAAACACATTGTTCGTGAGGTTAATGTGGCTCGTCAGTCTGGCACGATATTTTCCATTATAGATAGCAGAATGGGTTCCTATCCATCTGATTGCGTGGAGAAGTTTCTGGCTCTAGCCCTCAGTTGTTGCGATGAGAATCAAGAGGAGCGACCATGCATGCAAGATGTGGTGAGGGAGCTGGAAATTATTCTTGCAATGTTGCCAGAAACTGAAACTACTTTCTCGGATAGTAATTCTGATTATTCTGGTAAACTGGCATCATCATCATCAACATCCTACATGGCAAGGGAGGACCAAAACATTTCATCAACTGTGCTGTCGGGAAGCAATCTTGTCAGTGATGTTATTCCGAGCATTGTTCCACGTTAA 2949 0.411 MDQLTTTATGFKLPLVVSHVLFLSTSQVIGMLGPRLYGYVLAISFCYFILTAATQRTDPSEVKALVQINKSLIDPMGHLRNWNKGDPCTSNWTGIWCFDRVSPDGYFHIRELYLMTMNLSGSLAPQLGQLSQLRIMNFMWNDLTGTIPKEIGSIKSLKLLLLNGNKLSGTLPDELGNLSNLNRLQVDENQFSGRIPQSFANLINVRHLHLNNNSFIGQIPPELSKLSNLLHLLLDNNDLSGYLPPEFSMLQGLRILQLDNNNFSGAEIPSTYANLSRLAKLGLRNCSLQGAVPDLSSIRKLSYLDLSWNHLSGPIPPKKLANNITTIDLSNNNINGSIAESFTLLPFLQRLSLENNFLSGPIPDSIWLNMSFSPSAKLTVDLRNNSFSDILGSLNPPANVTLRLAGNPICKNSNMHNIGQYCGPEGLDDDKSTNSKSVCLIQACPVDNFYEYVPASPVHCFCAAPLRIGYRLKSPSFSYFPPYRTPFELYITHSLNLDQYQLSVDSYAWEEGPRLRMYLKIFPKFVDSHSNLFNTSEVHRIEDIFASWEFPPTDFFGPYELLNFTLLGPYANIIVESDRRKLNTAVLAVAIIAAIAGVMAISAIFTFVIARRHVRYRPKISRNRMSSNISIKIDGVKAFTFKELALATGNFSSSTEVGQGGYGKVYKGTLSDKTIVAIKRVEEGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCDEDDEQILVYEFMPNGTLREWISGKRKGNLNFGMRLQFALGAAKGILYLHTEANPPIFHRDIKASNILLDGMLIAKVADFGLSRLAPYLDDEGTVPKYVSTVVRGTPGYVDPEYFLTRKLTDKSDVYSLGIVFLELLTGMQPISHGKHIVREVNVARQSGTIFSIIDSRMGSYPSDCVEKFLALALSCCDENQEERPCMQDVVRELEIILAMLPETETTFSDSNSDYSGKLASSSSTSYMAREDQNISSTVLSGSNLVSDVIPSIVPR 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0024 982 Pfam Protein kinase domain 653 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0024 982 Gene3D Phosphorylase Kinase; domain 1 622 726 - -
Dere12g0024 982 Pfam Leucine rich repeat N-terminal domain 59 97 IPR013210 -
Dere12g0024 982 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 727 937 - -
Dere12g0024 982 ProSiteProfiles Protein kinase domain profile. 651 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0024 982 SUPERFAMILY Protein kinase-like (PK-like) 636 951 IPR011009 -
Dere12g0024 982 Gene3D Ribonuclease Inhibitor 250 321 IPR032675 -
Dere12g0024 982 Gene3D Ribonuclease Inhibitor 176 249 IPR032675 -
Dere12g0024 982 CDD STKc_IRAK 657 923 - -
Dere12g0024 982 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 59 220 - -
Dere12g0024 982 SMART serkin_6 651 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g0024 982 Gene3D Transferase(Phosphotransferase) domain 1 727 942 - -
Dere12g0024 982 Gene3D Ribonuclease Inhibitor 60 175 IPR032675 -
Dere12g0024 982 Gene3D Ribonuclease Inhibitor 322 410 IPR032675 -
Dere12g0024 982 SUPERFAMILY L domain-like 74 417 - -
Dere12g0024 982 FunFam Leucine-rich repeat protein kinase family protein 615 726 - -
Dere12g0024 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 771 783 IPR008271 GO:0004672|GO:0006468
Dere12g0024 982 PANTHER RECEPTOR-LIKE PROTEIN 55 71 926 - -
Dere12g0024 982 ProSitePatterns Protein kinases ATP-binding region signature. 657 679 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0024 Dere-ChrDere12 237120 249165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0024 35 932 Receptor kinase-like Gene Family AT5G01950 62.084 0.0 1110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Dere12g0024 Pkinase 2.5e-48 CL0016