Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g0008 ATGGAAGGATTGGATGGGTTGATAGAGAGGCTTTTGGAAGCGAGGAAGAACAGAGGCAAGCGGATTCAACTGATAGAGTCAGAAATTCGGAACCTTTGCATCACTGCAAAAGAAATCTTCCTGAATCAGCCTAACCTTTTGGAATTGGAAGCTCCCATCAACGTTTGTGGTGACATACACGGGCAATATCCAGACCTGTTGCGACTGTTCGAGTACGGAGGTTTTCCGCCGCAATCCAATTACCTATTCCTGGGGGACTATGTGGACAGAGGAAAACAGAGTGTTGAAACAATATGTCTGCTGCTCGCCTACAAGATCAAATTCCCAGAGAACTTTTTTCTGCTTCGAGGGAATCACGAATGTGCTTCCATCAACAGAATCTACGGATTCTACGACGAGTGCAAGAGGAGATTCAGTGTGCGTCTCTGGAAGATATTTACGGATTGTTTCAACTGTCTGCCTGTGGCTGCAGTGATCGATGACAAGATTCTATGCATGCATGGGGGGCTATCCCCTGAGATGGAGAGCTTGAATCAGATCAAAGATATCGAAAGGCCAGTGGATGTGCCCGACCAGGGCCTATTGTGTGACCTGCTTTGGGCTGATCCAGACAGAGACATCAAAGGGTGGGGTGAAAATGACAGGGGTGTCTCCTACACTTTTGGACCTGACAAGGTTGCTGAGTTTTTGAAGAAGCACGATTTGGATCTTATATGCCGGGCACACCAGGTGGTGGAAGATGGGTACGAATTCTTTGCAGACAGGCAACTAGTGACCATATTTTCAGCGCCAAACTACTGTGGAGAGTTCAATAATGCGGGAGCACTCATGTGCGTCGACGAGACTTTACTCTGCTCCTTTCAGATACTCAAACCCTGGAGAGGAAAAGCCCCACTCCTGGAATAG 906 0.4768 MEGLDGLIERLLEARKNRGKRIQLIESEIRNLCITAKEIFLNQPNLLELEAPINVCGDIHGQYPDLLRLFEYGGFPPQSNYLFLGDYVDRGKQSVETICLLLAYKIKFPENFFLLRGNHECASINRIYGFYDECKRRFSVRLWKIFTDCFNCLPVAAVIDDKILCMHGGLSPEMESLNQIKDIERPVDVPDQGLLCDLLWADPDRDIKGWGENDRGVSYTFGPDKVAEFLKKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFNNAGALMCVDETLLCSFQILKPWRGKAPLLE 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g0008 301 SMART pp2a_7 24 294 IPR006186 GO:0016787
Dere12g0008 301 ProSitePatterns Serine/threonine specific protein phosphatases signature. 115 120 IPR006186 GO:0016787
Dere12g0008 301 Gene3D - 2 298 IPR029052 -
Dere12g0008 301 Pfam Serine-threonine protein phosphatase N-terminal domain 4 50 IPR031675 -
Dere12g0008 301 FunFam Serine/threonine-protein phosphatase 1 294 - -
Dere12g0008 301 PRINTS Serine/threonine phosphatase family signature 52 79 IPR006186 GO:0016787
Dere12g0008 301 PRINTS Serine/threonine phosphatase family signature 256 272 IPR006186 GO:0016787
Dere12g0008 301 PRINTS Serine/threonine phosphatase family signature 177 204 IPR006186 GO:0016787
Dere12g0008 301 PRINTS Serine/threonine phosphatase family signature 234 254 IPR006186 GO:0016787
Dere12g0008 301 PRINTS Serine/threonine phosphatase family signature 81 108 IPR006186 GO:0016787
Dere12g0008 301 PRINTS Serine/threonine phosphatase family signature 114 138 IPR006186 GO:0016787
Dere12g0008 301 PRINTS Serine/threonine phosphatase family signature 148 174 IPR006186 GO:0016787
Dere12g0008 301 Pfam Calcineurin-like phosphoesterase 52 244 IPR004843 GO:0016787
Dere12g0008 301 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 10 293 - -
Dere12g0008 301 CDD MPP_PP1_PPKL 4 292 - -
Dere12g0008 301 SUPERFAMILY Metallo-dependent phosphatases 20 294 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g0008 Dere-ChrDere12 139553 140672 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g0008 31 240 Calmodulin-binding Proteins AT5G63870 31.200 3.28e-32 119