LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere12g0005	ATGGGCAACTGCGGTACTAGAGAGGAAGCGGCTGTTGTCTCCAATGCTCAAGTTCAACAGCTGCACATGTCGTCCTTGCCTGCTAAAAGTGCTGCCAATGAAAAGAAACACAATCGCTCTGTGTCAGATCTGAGCGACATTTCCACCCCACGCAACAACTTCGAAGATGCCAGAAAGAATACAGTACTCTATACTCACGTCATTGCTTTTACATTGTATGAGCTCGAGACTATCACCAAGAGCTTCCGCTCCGATTATATCCTCGGAGAAGGTGGATTCGGCACTGTCTATAAAGGTTACATTGACGAGAATGTGAGGGTTGGCCTCAAATCTCTTCCCGTTGCTGTCAAGGTTCTAAACAAGGAGGGCCTTCAGGGACATCGAGAGTGGCTTACAGAAGTCAATTTCCTGGGGCAGCTTAGGCATCCTAATTTGGTTAAATTGATTGGATACTGCTGTGAGGACGATCACAGGCTACTTGTATATGAGTTCATGTTTCGAGGAAGTCTAGAGAATCACCTATTCCGAAAGGCAACTGTTCCTTTATCATGGGCTACGAGAATGATGATTGCCCTTGGAGCTGCTAAGGGGCTTGCTTTTCTTCACAATGCTGAAAGGCCAGTAATCTATCGAGACTTCAAAACATCTAATATATTATTGGACTCTGACTATACAGCCAAGCTTTCTGATTTTGGACTAGCAAAAGCTGGACCACAAGGTGATGAAACTCATGTGTCCACCAGGGTCATGGGTACCTATGGTTATGCTGCTCCTGAATATGTAATGACTGGTCACCTGACTGCAAGGAGTGATGTGTATAGCTTTGGAGTTGTTCTTTTAGAGCTTTTAACCGGAAGGAAGTCTGTTGACAAAACAAGACCAGGTAAGGAACAGAGCTTGGTAGATTGGGCCCGACCAAAGCTTAATGACAAGAGAAAGCTCCTGCAGATAATTGATCCAAGATTGGAGAACCAATACTCAGTGAGGGCTGCACAGAAAGCATGTAGCTTGGCTTACTACTGTTTGAGTCAAAATCCCAAAGCAAGGCCATTAATGAGTGATGTAGTTGAGACGTTGGAACCTTTACAAAGTTGTAGTGATGGTGCTGGTGAAGTCTCATCATTGGGACCAAGTAATGGTGGTGGCAGTCCCTTTGCTATGAGTGGAATACCTGAACATCGGATGCGCCAGAGGTTCTCGAACAATGTTGGTCCAGGTGTTAGTTGTCGGTCTCCAAACCCAAACTGCTCACCAGGTGCCCCTGCAGCATGCAGGGTCAGGTGA	1284	0.4595	MGNCGTREEAAVVSNAQVQQLHMSSLPAKSAANEKKHNRSVSDLSDISTPRNNFEDARKNTVLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSCSDGAGEVSSLGPSNGGGSPFAMSGIPEHRMRQRFSNNVGPGVSCRSPNPNCSPGAPAACRVR	427

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere12g0005	427	ProSitePatterns	Protein kinases ATP-binding region signature.	88	117	IPR017441	GO:0005524
	Dere12g0005	427	CDD	STKc_IRAK	88	362	-	-
	Dere12g0005	427	MobiDBLite	consensus disorder prediction	367	381	-	-
	Dere12g0005	427	Gene3D	Transferase(Phosphotransferase) domain 1	165	371	-	-
	Dere12g0005	427	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	208	220	IPR008271	GO:0004672\|GO:0006468
	Dere12g0005	427	ProSiteProfiles	Protein kinase domain profile.	82	363	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere12g0005	427	Pfam	Protein tyrosine and serine/threonine kinase	87	359	IPR001245	GO:0004672\|GO:0006468
	Dere12g0005	427	PANTHER	OS01G0588500 PROTEIN-RELATED	42	363	-	-
	Dere12g0005	427	FunFam	Serine/threonine-protein kinase BIK1	48	164	-	-
	Dere12g0005	427	SUPERFAMILY	Protein kinase-like (PK-like)	58	360	IPR011009	-
	Dere12g0005	427	MobiDBLite	consensus disorder prediction	404	427	-	-
	Dere12g0005	427	MobiDBLite	consensus disorder prediction	27	50	-	-
	Dere12g0005	427	MobiDBLite	consensus disorder prediction	367	389	-	-
	Dere12g0005	427	FunFam	Probable serine/threonine-protein kinase PBL8	165	375	-	-
	Dere12g0005	427	Gene3D	Phosphorylase Kinase; domain 1	42	164	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere12g0005	Dere-ChrDere12	106863	111186	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere12g0005	51	369	Glycoside Hydrolase	AT3G07070	52.174	1.11e-109	327

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Dere12g0005		PK_Tyr_Ser-Thr	4.5e-48	CL0016