Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1939 ATGCACCACAACCTTGCTGGGTTGTGGATTTCTTCACTCGTGGTCTTCATCACCGTAGTTCATTGCAAGACCGCCCCTCATGATGCAATGATATGTTCAGGATTAGTTTTCCTGGCTCTTGAAAAGAATGAAACCTTATTTCAAATTTCAGCCCTTAATGTGATGTATACCAACTTAAAATCTCATGCACAAATGAGAGGCTGGAAATCAAGTGGTGGTGATCCTTGTGGTGACTCATGGGAAGGAATCAAATGTTCAGGCTCATCTATCACAGAAATAAATTTGTCTGGCAGGGGACTTACTGGATCAATGGGTGACATGAGCAACAACAACCTCCAGGGTGATATACCATATCAACTTCCACCTAATGCTCATTACATAGATCTTTCTAAGAATAGCTTCACTGGAGGGATTCCTTATTCTATTTCTCAGATGAGTGACCTTGACACTCTAAATCTTGCACGCAATCAGCTCAATAATCACTTAAGTGATATGTTTGGGAAACTCAAAAAACTTAAACTACTGAATGTTGAAAATAACAAATTTACTGGTTGGGTCCCTGAGGAGTTGAAGGATATTAGTAGCCTGAAAACTGGAGGAAACTCCTGGTTAACAGGAGCAGCCCCTCCTCCTCCTCCTGGTACACCTCCTCTCAAGCGTTCTGGAAAAAAACAGGAAAATGGGAAATCTGTTGTTATTGGCATAGTTGTAGCAAGCATTGCTTTGGGTTTACTCATTGTTACTATAATTGGCATTGCTCTTATTAAAAGAAGATCATCTCCACATTCTTCAAATTTTATAGACGAAGGGCATGGCCATCATAGATCTTTTACGCCTCTTGCCTCTCAGGAATTAAACAAAGATTCTGAATTTAAGTCCTTGGATTCTGCTTCAATTGACATAAAGGCTTTGCAAAAAGTTCCATCAACTGGTGTAAAGTCTTCGGTATCTGATTGTGTACAAACCTTTAATGATAATGAGTTTTCAAATCGTCTAAACGCTAGAAGAAGCACCTCGGTACGTGCAGCTTGTTTGTCATTTGCAGATTTGAGGGCTGCGACTGGTAATTTTGCATCAAGTCGCCTTCTCGGTGAAGGAACCATTGGATGTGTTTATCGGGCAAAATATACTGATGGAAAGGTTTTAGCTGTGAAAAAAATTGACTCTACACATTTCCATGGCAGCTCTTGGGAGGAATTCTCTCAGATTATTTCAAACATTTCCAAGGTTCACCACCCAAACATTGCCGAGCTTGTTGGTTATTCTTCAGAACAGGGACACAACATGTTAGTTTATGAGTATTTCAGAAACGGCTCTCTTCATGAATTTTTACATGTGTCAGATGACTTCAGCAAACCACTAACATGGAACACGAGAGTCAGAATTGCACTGGGCACAGCTCGAGCTGTTGAGTACCTGCATGAAATTTGTTCTCCATGCTTAGTTCACAAGAACATCAAGTCTTCCAATATTCTGCTTGACACTGAACTCAATCCTCATCTCTCAGACTATGGTTTGGCATCGTTCTATCAGCGCACTAGCCAAAACCTTGGGGCAGGATATAATGCACCGGAGTGTACAAAACCTTCAGCTTATACCCTGAAGAGTGATGTTTACAGTTTCGGGGTAGTCATGTTGGAGCTGTTAACTGGTCGAAAGCCTTTGGACAGTTCAAGGCCAAAATCAGAACAATGTCTTGTTCGTTGGGCCACTCCACAGCTTCATGACATTGATGCATTGTCAAAAATGGTGGATCCTGCCTTGCGAGGACTTTACCCTCCTAAATCACTCTCACGATTTGCCGACATCATCGCCCTTTGTGTTCAGCCTGAGCCCGAATTTCGCCCACCGATGTCAGAAGTGGTTCAGGCATTGGTACGACTAGTTCAGCGTTCAAATATGAACATGAGAGAGGATCTGGGCGCTTCTTGTCGGATGGATGATTTTGATGCCTAA 1956 0.4202 MHHNLAGLWISSLVVFITVVHCKTAPHDAMICSGLVFLALEKNETLFQISALNVMYTNLKSHAQMRGWKSSGGDPCGDSWEGIKCSGSSITEINLSGRGLTGSMGDMSNNNLQGDIPYQLPPNAHYIDLSKNSFTGGIPYSISQMSDLDTLNLARNQLNNHLSDMFGKLKKLKLLNVENNKFTGWVPEELKDISSLKTGGNSWLTGAAPPPPPGTPPLKRSGKKQENGKSVVIGIVVASIALGLLIVTIIGIALIKRRSSPHSSNFIDEGHGHHRSFTPLASQELNKDSEFKSLDSASIDIKALQKVPSTGVKSSVSDCVQTFNDNEFSNRLNARRSTSVRAACLSFADLRAATGNFASSRLLGEGTIGCVYRAKYTDGKVLAVKKIDSTHFHGSSWEEFSQIISNISKVHHPNIAELVGYSSEQGHNMLVYEYFRNGSLHEFLHVSDDFSKPLTWNTRVRIALGTARAVEYLHEICSPCLVHKNIKSSNILLDTELNPHLSDYGLASFYQRTSQNLGAGYNAPECTKPSAYTLKSDVYSFGVVMLELLTGRKPLDSSRPKSEQCLVRWATPQLHDIDALSKMVDPALRGLYPPKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRSNMNMREDLGASCRMDDFDA 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1939 651 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 435 639 - -
Dere11g1939 651 MobiDBLite consensus disorder prediction 201 224 - -
Dere11g1939 651 Pfam Leucine rich repeat N-terminal domain 48 86 IPR013210 -
Dere11g1939 651 SUPERFAMILY L domain-like 66 196 - -
Dere11g1939 651 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 322 434 - -
Dere11g1939 651 PANTHER LEUCINE RICH REPEAT KINASE 2 88 631 - -
Dere11g1939 651 Gene3D Ribonuclease Inhibitor 47 209 IPR032675 -
Dere11g1939 651 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Dere11g1939 651 SUPERFAMILY Protein kinase-like (PK-like) 339 625 IPR011009 -
Dere11g1939 651 Pfam Protein tyrosine and serine/threonine kinase 360 625 IPR001245 GO:0004672|GO:0006468
Dere11g1939 651 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 46 176 - -
Dere11g1939 651 Gene3D Phosphorylase Kinase; domain 1 317 434 - -
Dere11g1939 651 Gene3D Transferase(Phosphotransferase) domain 1 435 647 - -
Dere11g1939 651 ProSiteProfiles Protein kinase domain profile. 357 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1939 Dere-ChrDere11 33215620 33227752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1939 1 650 Strubbelig Receptor Gene Family AT1G78980 54.596 0.0 750
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Dere11g1939 PK_Tyr_Ser-Thr 7.4e-42 CL0016