LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere11g1936	ATGGAACCCAAAAGGACACGGTTTGACAGCTCAAAAGTAGAGAGTATCGAAAATCAGAGGCCGCCCTTGGAGCTCTCTCGCACACAGCTGAAGTTTGAAAACCAACCAAAAATAAGCCTCCATCTAAAACCACGTCTCACGACAAATATCAAACCAAAACAAAACTCACATGCTGTCCAATCCCATTCCTTCCCTCCATATCTGGGCCTTGGCTCTCCTCTCCCTTCCACTTTGCTAATGGGCGCGCACGCCGCTTTGCCTGTGCGCGTTCCTGCAGCATCGTCCCACTCCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTATCGTCATCATGTCCCTCCTTCTCCTCCGCCGCCCCCTCTGATGTCGATGCCCTCTGGAAGTTCAAAAGCTCTCTCACAAATGTGGTTGCCCTCAGCAGTTGGGATCCCTCGGTCAACCCAAAGCCACCCTGCTCCGGTAACATTCCCAACTGGGTCGGCGTCTTCTGCTTCAACGACACCGTCTGGGGCTTCCGCCTCGAGAACATGGGTCTCACCGGCAACATTGACATTGAATCTCTTGCTTCTATGCACCACCTCCGCTCCATTAGCTTTATGAATAATACCTTTGCGGGCCCCATTCCCAACATCAAGCGCCTCAAAAATTTGAAGTCCCTCTACTTGTCCTACAATCATTTCTCCGGAGACATTCCTGACGATGCATTTGCGGGTATGAATATGCTCAAGAAAGTTCATTTGGCCAATAACCAGTTCACTGGTAAAATCCCTTCCTCTCTTGCCACCTTGCCTAACCTCATGGCTCTCAGGCTTGACGCCAACAAGTTTCATGGCCGAATCCCTGACTTTCGAAGCAACAAGTTGAGGATTGTCGACTTCTCTAACAATGAGTTGGAAGGTCCCATCCCCACCAATCTAAGCACTTTCAACGCCTTCGCCTTTTCGGGGAACGCACATTTATGTGGGAAACCTCTGCAGAATGCATGTGCCTCGATGCCCTATGCAACCATGGAAACGACGAAGACCGTCATCCTCAAGATTCTGCTTATTCTCATAGTGACAGCACTGGTTGTAGTGGTGATCATTGGGGCAATCATGATAGCCCGTATGAGGGCCAGCCGAACAAGCCGGCGACACTCAGACGATTCAATGTCAACGTTTCGAAGCCAGCCATCTAATAAGTACGTTCCTCCTGTTCTGGCGAACACCAAAAACATGGCGGAAGTTGATAGTAAGCTGCAGCCGGATCAGAACACCACTCATTACCATGCGCAACCAAAGAAGGGGGAAGCAGGAAAGTTGACATTTGTGAGGGATTACCATAAGAAGTTTGACTTGCAGGACTTGCTGAAAGCGTCTGCTGAAATTCTAGGGAGTGCCTCATTTGGGTCTTCCTACAAGGCTGTGATGAGGGACGACCAAGCCGTGGTTGTGAAGAGGTACAAGCATATGAACAATGTGGCTAGAGATGAGTTCTTTGAGCACATGACAAGGCTAGGCAATCTCTCCCATCCGAATCTTCTCCCCCTTGTCGCCTATTATTATAGGAGAGAGGAGAAGCTCTTGCTCTCAGACTATGTTCCCAGGGGTTGCTTGGCCAGCCATCTCCATGGTAATCATAACTATCAACAGCCGGGGCTTGATTGGCCTACTCGGTTGAAAATTGTAAAAGGTGTAGCCAAGGGTTTGTCATACCTGTACAATGCACTGCCCAACCTGGTTGTGCCTCATGGTCATCTGAAATCGTCCAATGTTCTGTTGGATGAATCGTTTGAGCCCGAACTCACCGATTATGCACTCATTCCTGTCATCAACCTGGATCATGCCCAACAAATCATGATGCCTTACAAATCGCCCGAGTACGCACAACTTGGCCGCATTACTAAGAAGACTGATGTGTGGAGTTTCGGCATTGTTATTCTGGAGATCTTAACTGGAAAATTCCCTGAGAACTATCTCACTCACAGGCATGACACTAATTCAGACATTGCCAGTTGGGTGAACACCATGATCACCGAGAAGCGCACGGGTGAAGTGTTCGATGTTGAGATGGGAGGAGTCGAGAACAGCAAAGGTGAATTGCTCAAACTTTTGAAGATTGGCTTGAGTTGCTGTGAGGAGAACGTGGAAAGAAGATTGGACATGAAGGAAGCTCTTGAGCAGATTGAGGAGTTGAAGGATGAGAGTGATGGAGAATATTCTTTGTTTGTCACTAGCGAACGGGATGCTTTTCAGATTATATGA	2244	0.4866	MEPKRTRFDSSKVESIENQRPPLELSRTQLKFENQPKISLHLKPRLTTNIKPKQNSHAVQSHSFPPYLGLGSPLPSTLLMGAHAALPVRVPAASSHSFFFLLLLLLLLSSSCPSFSSAAPSDVDALWKFKSSLTNVVALSSWDPSVNPKPPCSGNIPNWVGVFCFNDTVWGFRLENMGLTGNIDIESLASMHHLRSISFMNNTFAGPIPNIKRLKNLKSLYLSYNHFSGDIPDDAFAGMNMLKKVHLANNQFTGKIPSSLATLPNLMALRLDANKFHGRIPDFRSNKLRIVDFSNNELEGPIPTNLSTFNAFAFSGNAHLCGKPLQNACASMPYATMETTKTVILKILLILIVTALVVVVIIGAIMIARMRASRTSRRHSDDSMSTFRSQPSNKYVPPVLANTKNMAEVDSKLQPDQNTTHYHAQPKKGEAGKLTFVRDYHKKFDLQDLLKASAEILGSASFGSSYKAVMRDDQAVVVKRYKHMNNVARDEFFEHMTRLGNLSHPNLLPLVAYYYRREEKLLLSDYVPRGCLASHLHGNHNYQQPGLDWPTRLKIVKGVAKGLSYLYNALPNLVVPHGHLKSSNVLLDESFEPELTDYALIPVINLDHAQQIMMPYKSPEYAQLGRITKKTDVWSFGIVILEILTGKFPENYLTHRHDTNSDIASWVNTMITEKRTGEVFDVEMGGVENSKGELLKLLKIGLSCCEENVERRLDMKEALEQIEELKDESDGEYSLFVTSERDAFQII	747

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere11g1936	747	Gene3D	Ribonuclease Inhibitor	121	237	IPR032675	-
	Dere11g1936	747	Gene3D	Transferase(Phosphotransferase) domain 1	527	741	-	-
	Dere11g1936	747	Pfam	Leucine rich repeat	216	276	IPR001611	GO:0005515
	Dere11g1936	747	SUPERFAMILY	L domain-like	149	309	-	-
	Dere11g1936	747	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	103	730	IPR046959	-
	Dere11g1936	747	Pfam	Protein tyrosine and serine/threonine kinase	455	720	IPR001245	GO:0004672\|GO:0006468
	Dere11g1936	747	FunFam	pollen receptor-like kinase 1	420	526	-	-
	Dere11g1936	747	Gene3D	Phosphorylase Kinase; domain 1	417	526	-	-
	Dere11g1936	747	Coils	Coil	708	735	-	-
	Dere11g1936	747	Gene3D	Ribonuclease Inhibitor	238	331	IPR032675	-
	Dere11g1936	747	Pfam	Leucine rich repeat N-terminal domain	120	164	IPR013210	-
	Dere11g1936	747	ProSiteProfiles	Protein kinase domain profile.	451	736	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere11g1936	747	MobiDBLite	consensus disorder prediction	1	21	-	-
	Dere11g1936	747	FunFam	Pollen receptor-like kinase 1	527	734	-	-
	Dere11g1936	747	FunFam	Nuclear pore complex protein NUP107	119	282	-	-
	Dere11g1936	747	SUPERFAMILY	Protein kinase-like (PK-like)	455	726	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere11g1936	Dere-ChrDere11	33156668	33159192	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere11g1936	103	743	Receptor kinase-like Gene Family	AT5G35390	49.233	0.0	590

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Dere11g1936		PK_Tyr_Ser-Thr	2e-28	CL0016