Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1894 ATGGCTGGTACAGGAATCCACCCTTACCACCAGCAATGGCCCGCTGCGGCGGCTGCTCCTCCTCCTCCGCCCGCTGCGGCCGCCGCTCCTCCTGCTCCTCACCCCCCTCCTATACTCGTTGACAATTCTGCCCGTCCCCCTGCCGATGAGGTTCGGACAATCTTTATAACAGGCCTTCCTGAAGACGTAAAAGAGAGAGAACTCCAGAATCTGCTGAGGTGGTTACCTGGATATGAAGCGTCTCAGGTAAATTTTAAAGGCGAAAAACCCATGGGTTTTGCTCTCTTCACCACAGGACAGCAAGCGGTTGCGGCTAAAGATATTCTCCAGGACATGGTCTTCGATGCAGAGACAAAGTCAGTGCTGCACACTGAGATGGCTAAGAAAAATCTTTTTGTCAAAAGAGGTATAGTAGCAGATTCTGGTGCATATGATCAAAGCAAACGGTTAAGGACTGCCGGTGATTATACACACACTGGATATCCGAGTCCATCTCCTTTTCACCCTCCTCCAGCACCTGTTTGGGGACCGCATGGATATATGGCTCCACCTCCTCCTCCGTATGATCCATATGGTTATCCTGTCGCACCTTTACCAATGCCTACTCCTGCTCCTGTACCAGCACCTAGCAGTTATGTCCCTGTTCAGAACACAAAAGATAATCCTCCATGCAACACTCTGTTTATTGGGAACTTGGGAGAGAACATAAATGAGGAAGAACTGAGGGGTCTTTTTAGTGTACAACCTGGTTTTAAGCAAATGAAGGTTTTGAGACAGGAGAGGCATACGGTTTGCTTCATTGAGTTTGAAGTTAGTAACTTTCTGGATGTTAATAGTGCTACTAATGTGCATCATAGTCTGCAGGGTGCTGTTATCCCAAGTTCTGGCTCATTTAATGAAATTGATTGGTGTTTAAGACTGGGAGCTAGTATAATGCTTGCCCATGTAGCCATGTACCATGTATATTCAAAGAATCCATTTGGCAAAAGAAAGGATGCCAATTACCCTGTTGCTGCCCCAAGAATTTCATTTCAATACGACAAAGCTTTCTTTCATATGGGGAGGTCAATTACTGCTGCCGCCATATTATTGCAGTGTCGGTTACTCGTTGTAACAGAAACAACTGGTAAATTAAGTACAAGTCAGAAAAGGGAAAATGGTCTGGTTATAACTGGGTGCCTTCAAATGAATCCATCACCTGCAACTCCATGTCATTCAAATAGAAGCCTTCACCATGTTTTGCATGAAATGAATCCACCCCCAACCTTGGACTGGAATGTCTGCTATAACATAGCAGTTGGAATTGCACATGAACTGGCATATCTGCATCACGATTGCGATCCTCCCATAGTGCACCAACATATCAATTCAAACAATATACTTCCTGATTCTGAAATGAAACCTCACATATCTGATTCGGGTGTTGCCTTGCTTTCAAATCAGTCTTCTTCTCCAACGAGTCAGCCATCCACATCTTCTGAAGAGGAGAAAGATGCGTTAGTGAGATGGGCAAGATCTGTGTGGAGCACAAAAGCAGATATTACAAAAATTGTTGATTCAAGCCTTGCAAGGGAACTATCCCAGTCCAGTGCAGCAATAGCACAACAAGCTTTTAAGGTGCTTTGGGTAGCTTTGTTATGTTCTAAGACGGATCCACGTAAGAGACCCACAATGAGAACTGTTATTAAGCTTCTTGAGCAACCCTTCTGA 1710 0.4503 MAGTGIHPYHQQWPAAAAAPPPPPAAAAAPPAPHPPPILVDNSARPPADEVRTIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFTTGQQAVAAKDILQDMVFDAETKSVLHTEMAKKNLFVKRGIVADSGAYDQSKRLRTAGDYTHTGYPSPSPFHPPPAPVWGPHGYMAPPPPPYDPYGYPVAPLPMPTPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGENINEEELRGLFSVQPGFKQMKVLRQERHTVCFIEFEVSNFLDVNSATNVHHSLQGAVIPSSGSFNEIDWCLRLGASIMLAHVAMYHVYSKNPFGKRKDANYPVAAPRISFQYDKAFFHMGRSITAAAILLQCRLLVVTETTGKLSTSQKRENGLVITGCLQMNPSPATPCHSNRSLHHVLHEMNPPPTLDWNVCYNIAVGIAHELAYLHHDCDPPIVHQHINSNNILPDSEMKPHISDSGVALLSNQSSSPTSQPSTSSEEEKDALVRWARSVWSTKADITKIVDSSLARELSQSSAAIAQQAFKVLWVALLCSKTDPRKRPTMRTVIKLLEQPF 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1894 569 Gene3D - 47 133 IPR012677 -
Dere11g1894 569 Gene3D - 212 302 IPR012677 -
Dere11g1894 569 SUPERFAMILY RNA-binding domain, RBD 50 291 IPR035979 GO:0003676
Dere11g1894 569 SMART rrm1_1 53 123 IPR000504 GO:0003723
Dere11g1894 569 SMART rrm1_1 226 302 IPR000504 GO:0003723
Dere11g1894 569 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 306 IPR000504 GO:0003723
Dere11g1894 569 CDD RRM_RBPMS_like 52 125 - -
Dere11g1894 569 MobiDBLite consensus disorder prediction 15 42 - -
Dere11g1894 569 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 271 IPR000504 GO:0003723
Dere11g1894 569 Gene3D Transferase(Phosphotransferase) domain 1 490 568 - -
Dere11g1894 569 Gene3D Transferase(Phosphotransferase) domain 1 406 489 - -
Dere11g1894 569 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 188 290 - -
Dere11g1894 569 MobiDBLite consensus disorder prediction 476 494 - -
Dere11g1894 569 FunFam RNA-binding protein with multiple splicing 2 48 138 - -
Dere11g1894 569 SUPERFAMILY Protein kinase-like (PK-like) 402 565 IPR011009 -
Dere11g1894 569 MobiDBLite consensus disorder prediction 14 44 - -
Dere11g1894 569 MobiDBLite consensus disorder prediction 476 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1894 Dere-ChrDere11 32834960 32841685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1894 409 566 Receptor kinase-like Gene Family AT1G73080 36.946 5.67e-28 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere11g1894 RRM_1 2.7e-06 CL0221