Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1886 ATGGAGGGCAACCAAAGCGCAGACAAATACACTAGTAATGAGAGGGAAACAAAGTGGGGTCCCGTGGCCTTCTATTATGGGGCATTTGCGGTAGACACGCATTCTTCAAACCCAAACACTATCTGTCTCTCTCTCTCTCTCTCATCTTCATCGCATTCATTGCACTTCGTTCCTCCAATGGCTGCCACCCAGATTACTAAGAACCAGCACGACATCGTTTTCCGGTCCAAACTTCCCGACATCTACATCCCCAAACACCTTCCTCTTCATTCCTACTGCTTCGAAAACCTCTCCGAATTCGGATCCCGGCCTTGTCTCATCAATGCCCCCACCGGTGACATCTACACCTACTACGACGTCGACCTCACCGCCCGGCGAGTCGCCTCCGGCTTGAACAAGTTCGGCGTCGGACAGGGTGACGTCATCATGGTCCTCCTCCCCAATTCCCCTGAATTCGTGTTCGCCTTTCTCGGCGCGTCCTATTGCGGCGCCATGACAACCGCCGCCAATCCCTTCTTCACGCCCGCCGAGGTTGCAAAACAAGCCAAGGCGTCCAACGCCAAGCTTATCGTCACGCAGTCTTCTTACTTCCAGAAGGTGAAGGACTTGGACGCGAAGCTGGTGTTCGTGGATTCTCCCCCAGAAGGGCATTCCCATTTCTCGGAGCTATCCCAAGCCGACGAGAACGATATTCCAGAAGTGAAAATCAAGCCCGACGATGTGGTGGCGCTACCGTATTCGTCGGGGACTACAGGGTTACCAAAAGGCGTGATGCTGACACACAAAGGGTTGGTGACTAGCATCTCACAACAAGTTGATGGGGAGAATCCGAATCTGTATTTTCACCATGAGGATGTGATTCTGTGTGTGCTTCCCCTGTTTCACATCTACTCGCTGAATTCGGTTCTGCTGTGTGGGTTAAGAGCCAAGGCTGCGATCATGTTGATGCCAAAGTTTGAGATCAACGCGTTGCTGGGTTTGATAGGAAAGTATAAGGTGACGATTGCGCCAGTTGTGCCCCCAATCGTGTTGGCCATTTCTAAATCTCCAGACATTGACAAGTATGATCTGTCGTCTATCAGAGTGTTGAAGTCTGGTGGGGCTCCTCTGGGGAAGGAGCTTGAAGACGCTGTGAGAGCCAAGTTCCCTAAGGCCAAGCTGGGTCAGGGGTACGGGATGACTGAGGCAGGGCCAGTGTTGACGATGAGCTTAGCGTTTGCTAAGGAAGCCATGGATGTGAAAGCAGGAGCGTGTGGAACAGTTGTGAGAAACGCAGAAATGAAGATTGTGGACCCTGAAACTTGTCAATCTTTGCCTCGCAATCACCCCGGCGAGATCTGCATTAGAGGCGACCAAATTATGAAAGGTTATCTGAATGATCCGGAGGCTACAAAAAGAACGATAGACGAGGGGGGGTGGTTGCATACGGGCGACATAGGTTACATCGACGACGACGATGAGCTGTTCATCGTTGATAGACTGAAGGAGCTGATCAAGTACAAAGGGTTCCAGGTGGCCCCCGCTGAGCTCGAAGCCCTTCTTCTATCTCATCCACACATCACCGATGCTGCCGTGGTCCCAATGAAAGACGAAGCAGCCGGAGAGGTGCCCGTGGCATTTGTGGTGAGATCCAATGGTCACACAGACACCACGGAGGATGACGTCAAGCAGTTTATCTCAAAACAGGTGGTGTTTTATAAGAGAATAAGCAAAGTGTTCTTCGTGGATGCTATTCCAAAGTCCCCATCAGGCAAGATCCTAAGAAAGGATCTAAGAGCAAAACTAGCTGCTGTTGCTGCTTAG 1803 0.5136 MEGNQSADKYTSNERETKWGPVAFYYGAFAVDTHSSNPNTICLSLSLSSSSHSLHFVPPMAATQITKNQHDIVFRSKLPDIYIPKHLPLHSYCFENLSEFGSRPCLINAPTGDIYTYYDVDLTARRVASGLNKFGVGQGDVIMVLLPNSPEFVFAFLGASYCGAMTTAANPFFTPAEVAKQAKASNAKLIVTQSSYFQKVKDLDAKLVFVDSPPEGHSHFSELSQADENDIPEVKIKPDDVVALPYSSGTTGLPKGVMLTHKGLVTSISQQVDGENPNLYFHHEDVILCVLPLFHIYSLNSVLLCGLRAKAAIMLMPKFEINALLGLIGKYKVTIAPVVPPIVLAISKSPDIDKYDLSSIRVLKSGGAPLGKELEDAVRAKFPKAKLGQGYGMTEAGPVLTMSLAFAKEAMDVKAGACGTVVRNAEMKIVDPETCQSLPRNHPGEICIRGDQIMKGYLNDPEATKRTIDEGGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLSHPHITDAAVVPMKDEAAGEVPVAFVVRSNGHTDTTEDDVKQFISKQVVFYKRISKVFFVDAIPKSPSGKILRKDLRAKLAAVAA 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1886 600 FunFam 4-coumarate--CoA ligase 2 496 598 - -
Dere11g1886 600 Pfam AMP-binding enzyme 97 500 IPR000873 -
Dere11g1886 600 Pfam AMP-binding enzyme C-terminal domain 509 585 IPR025110 -
Dere11g1886 600 Gene3D - 495 598 IPR045851 -
Dere11g1886 600 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 69 593 - -
Dere11g1886 600 Gene3D - 66 494 IPR042099 -
Dere11g1886 600 CDD 4CL 83 591 - -
Dere11g1886 600 FunFam Long-chain-fatty-acid--CoA ligase FadD 75 495 - -
Dere11g1886 600 SUPERFAMILY Acetyl-CoA synthetase-like 69 597 - -
Dere11g1886 600 ProSitePatterns Putative AMP-binding domain signature. 244 255 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1886 Dere-ChrDere11 32733491 32738016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1886 64 563 Monolignol Biosynthesis Gene Families AT1G51680 70.898 0.0 721