Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1883 ATGGCTCAGCACTCTGCCTTCGATCTTCTCTCTGCAGATGATTTTGATTACTCGCTCTCTTCTCTGTTTAGCGATCACGATGATGCTGTTCTCCCCATTTCCGATGATCAATTTGCTGAACACCTCCAGTTTCAGGAGTCTCTCATGTCCTCCATCATCGCTTCTGTATCCCTCAACGAAGCCTCATCCACCTCCATCCTCTCCTTACCTTCATCTTCCACTCCTTCATCTTCCCTAACAATCGTTCAAATTCCAGCCACCTCAGACCCAGAAACACAAGAAGTCGAATCTTTCCAAGTCGTCTGTCAAATCTGTGCAGAAACAAGAGGGCGTTCTGAGATGTTCACAAACCACAAATGCGACCATTCCTTCTGCTCTGACTGTGTAACCAGACAAGTAGCCACAAAGATCCAGGACAGCATAGCAATAGTTTCATGCCCTGGTTTGGGTTGTAAGGGTGTTCTTGAGCTGGATGCCTGCAGGCCATTGCTTCCAAAAGACCTACTTGAAAGGTGGGATCAGGCCCTGTGTGAAGCTTTGTTTCTGGCAGCTCCTAAATTTTACTGCCCATTCAAGGATTGTTCAGCTATGATGCTGGTTGAGAACGATGATGAAGGAGAAAGGATAAGGGAGTCAGAGTGCCCTGTTTGCCACAGATTGTTCTGTGCAAGGTGCAATGTCCCTTGGCATCCTGGGGTTGGATGTGAGGAATCCCAGACACCGAATAAGACTGACAGACAAAGGGAAGATCTGCTTGTGAAAGAGCTTGCTAATGAGAAGAAATGGAGAAGGTGTCCTCGCTGTAATTTTTACGTGGAGAAGAACGGTGGGTGTCAACATATCACTTGCAGGTCAGTTTTCTTGTACTAG 870 0.469 MAQHSAFDLLSADDFDYSLSSLFSDHDDAVLPISDDQFAEHLQFQESLMSSIIASVSLNEASSTSILSLPSSSTPSSSLTIVQIPATSDPETQEVESFQVVCQICAETRGRSEMFTNHKCDHSFCSDCVTRQVATKIQDSIAIVSCPGLGCKGVLELDACRPLLPKDLLERWDQALCEALFLAAPKFYCPFKDCSAMMLVENDDEGERIRESECPVCHRLFCARCNVPWHPGVGCEESQTPNKTDRQREDLLVKELANEKKWRRCPRCNFYVEKNGGCQHITCRSVFLY 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1883 289 ProSiteProfiles TRIAD supradomain profile. 98 289 IPR044066 -
Dere11g1883 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 180 IPR013083 -
Dere11g1883 289 Pfam IBR domain, a half RING-finger domain 185 235 IPR002867 GO:0008270
Dere11g1883 289 SUPERFAMILY RING/U-box 246 283 - -
Dere11g1883 289 SMART ibrneu5 170 235 IPR002867 GO:0008270
Dere11g1883 289 CDD BRcat_RBR_unk 183 237 - -
Dere11g1883 289 ProSiteProfiles Zinc finger RING-type profile. 102 147 IPR001841 -
Dere11g1883 289 ProSitePatterns Zinc finger RING-type signature. 120 129 IPR017907 -
Dere11g1883 289 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 70 283 IPR031127 GO:0004842|GO:0016567
Dere11g1883 289 SUPERFAMILY RING/U-box 100 179 - -
Dere11g1883 289 Gene3D - 233 286 - -
Dere11g1883 289 SUPERFAMILY RING/U-box 175 239 - -
Dere11g1883 289 FunFam RBR-type E3 ubiquitin transferase 97 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1883 Dere-ChrDere11 32716403 32717272 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1883 46 284 C3H Transcription Factor Family AT2G19610 24.498 7.57e-17 78.2