LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere11g1876	ATGAAGAAGAAGAAACATCCCGTTGAAGAGGTGGAGAAGAAGAAGTATCCAATTGGACCCGAGTATTATGAACTCTACGAAGAGATAGGACAGGGCGTGAGTGCCTCAGTGCATCGTGCTGTTTGTGTACCCTTCAATGAGACCGTTGCCGTCAAAATTCTTGATTTTGAACGTGACAATTCCAATCTGAATAACATTTTTCGTGAAGCACATACAATGAACTTAATTGACCACCCTAATGTTCTTAAATCACACTGCTCCTTTGTTAGTGATCATAATCTGTGGGTTGTCATGCCATATATGGCTGGTGGTTCCTGTCTTCACATCTTGAAAGCTGCCTACCCTGATGGTTTTGAGGAGGTTGTAATAGCCACAATATTGCGAGAGGTATTAAAGGGTTTAGAATATCTTCATCACCATGGGCATATACATCGAGATGTCAAAGCTGGGAACATTCTAATTGATGGACGTGGTGCAGTCAAGCTTGGAGATTTTGGTGTATCTGCTTGTCTTTTTGATTCAGGTGACAGGCAACGCACAAGGAATACATTTGTGGGGACACCCTGCTGGATGGCACCTGAGGTCATGGAGCAACTGCATGGTTATGACTTCAAAGCTGATATCTGGTCGTTCGGTATAACTGCATTGGAGCTTGCCCATGGTCATGCTCCTTTCTCAAAGTTTCCACCAATGAAGGTACTGCTCATGACATTGCAACATGCACCACCTGGCCTTGATTACGAAAGGGATCAAAAGTTCTCTAATTCATTTAAACAGATGATTGCTAGTTGTTTAGTGAAAGATCCTTCAAAACGACCAACTGCAAAAAAGCTGTTAAAGCATTCCTTCTTTAAGCAGGCTCGTTCAAATGATTATATTTCACGAACACTTCTTGAGGGGCTGCCTGCTTTAGGTGATCGCATGAAAGCCCTAAAGGTTCCAAATTATCAAACTGAAAACTTTTTGTCCCCTATGATGATAGAAAGTAGATTTATAAGGTGTTTTTTATTGCAGAGAAAAGAAGAAGACATGCTTGCCCAAAAGAAAATGCCTGATGGGGAAATGGAGGAATTATCTCAGATTGGGGATTCAGATGATCCTATAGATGATATCTGTCATATAGGAAGTTCAAATTGCTCTCCTACACTTGATGCACAAGTTAAGCAAACACCAAGTGAAAATCAAAACCCCTCTCAAATTGCAGATATGGAAGGTAATGATGAGATGCAAAATCAATTAGCTTCTGTTCCCACAGTTGGTTCCACACTAAATGATGCCAAGTTCAAATGTAAGGATCATGACTCTAGCGTCACCAGTTCAAGCCATAGACAGCACTTTTCACAGAATTCTTCACCCCATCTTGATGATCAGGTTGGCCATAATATGGATGAAAAATTTGACATCAACAACGGTGGGAGATTTGGGGATGCCATGGCTTTTCATTCGTCTCATGGTAGATTTTCAATGGAAGTTACTCTTCCATCTGTACAAGAAGAAAGTGAGAAACCACAAAATCAGCCCCAGAACACCTTAAACTGCAATGCAACAGCACTTCCACTCACTGGAGATGATGTGCTTTCTGAACTTCCTTCTAAAGTTTCAAAATTGTCAGTAGCTAGTTTTGATGACAATGATGAGAAAGCAAAGCTACCAGTTGTTCAGCAGAGAGGACGTTTTAAGGTTACTTCTGAGAATGTCGACATAGAAAAGGTTGGCCCATCATCTCCTGTACTGCAAAAGAGTCACAGCATGAAGGTTGGTAATTTTGAGGTTTGCACAGTTGTGATAACCCAAAAATCTAGTAGTTCTTATCTGAATAAGCCTTTTCATGCCTCAATTGCTCTGTCCTGTTGTACATGCCTGTATGAAACTTCTGCTGTGTATTTCTGA	1890	0.4095	MKKKKHPVEEVEKKKYPIGPEYYELYEEIGQGVSASVHRAVCVPFNETVAVKILDFERDNSNLNNIFREAHTMNLIDHPNVLKSHCSFVSDHNLWVVMPYMAGGSCLHILKAAYPDGFEEVVIATILREVLKGLEYLHHHGHIHRDVKAGNILIDGRGAVKLGDFGVSACLFDSGDRQRTRNTFVGTPCWMAPEVMEQLHGYDFKADIWSFGITALELAHGHAPFSKFPPMKVLLMTLQHAPPGLDYERDQKFSNSFKQMIASCLVKDPSKRPTAKKLLKHSFFKQARSNDYISRTLLEGLPALGDRMKALKVPNYQTENFLSPMMIESRFIRCFLLQRKEEDMLAQKKMPDGEMEELSQIGDSDDPIDDICHIGSSNCSPTLDAQVKQTPSENQNPSQIADMEGNDEMQNQLASVPTVGSTLNDAKFKCKDHDSSVTSSSHRQHFSQNSSPHLDDQVGHNMDEKFDINNGGRFGDAMAFHSSHGRFSMEVTLPSVQEESEKPQNQPQNTLNCNATALPLTGDDVLSELPSKVSKLSVASFDDNDEKAKLPVVQQRGRFKVTSENVDIEKVGPSSPVLQKSHSMKVGNFEVCTVVITQKSSSSYLNKPFHASIALSCCTCLYETSAVYF	629

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere11g1876	629	PANTHER	SERINE/THREONINE-PROTEIN KINASE FRAY2	12	596	IPR047173	GO:0043539
	Dere11g1876	629	Gene3D	Phosphorylase Kinase; domain 1	11	99	-	-
	Dere11g1876	629	SUPERFAMILY	Protein kinase-like (PK-like)	21	285	IPR011009	-
	Dere11g1876	629	ProSiteProfiles	Protein kinase domain profile.	23	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere11g1876	629	ProSitePatterns	Protein kinases ATP-binding region signature.	29	52	IPR017441	GO:0005524
	Dere11g1876	629	FunFam	Serine/threonine-protein kinase BLUS1	12	100	-	-
	Dere11g1876	629	FunFam	serine/threonine-protein kinase BLUS1 isoform X1	104	330	-	-
	Dere11g1876	629	CDD	STKc_OSR1_SPAK	23	284	-	-
	Dere11g1876	629	Gene3D	Transferase(Phosphotransferase) domain 1	104	305	-	-
	Dere11g1876	629	MobiDBLite	consensus disorder prediction	440	456	-	-
	Dere11g1876	629	MobiDBLite	consensus disorder prediction	431	456	-	-
	Dere11g1876	629	SMART	serkin_6	23	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere11g1876	629	Pfam	Protein kinase domain	23	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere11g1876	Dere-ChrDere11	32664309	32669679	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere11g1876	11	628	MAP Kinase Kinase Kinase Kinase	AT1G79640	58.281	0.0	681

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-Fray	Dere11g1876		Pkinase	3e-61	CL0016