Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1875 ATGAAGCTCACGGTGAAGACTTTGAAAGGAAGCCATTTTGAAATCAGGGTCCAGCCCTCCGACACTATTATGGCGGTTAAGAAGAACATTGAAGATGTACAAGGGAAGGATAATTATCCATGTGGACAGCAATTGCTGATTCACAATGGCAAGGTGTTGAAAGATGAGACTACACTTGCAGAGAACAAGGTCTCCGAAGATGGATTTCTTGTAGTCATGCTTAGCAAGAGTAAAACCTTGGGTTCAGCTGGGGCTTCATCTGCTCAGCCTGCTAGCAATCCAATGACAAATGTGTCAGCTTCAAATTCCACTCCTGCGGCTGAACCACCCGTACAAACTCAGGCTGCAGACAACAGAACATCTGCCACAGAAGTCAAGACGACAAATGTGCCTACAGATACTTATGGTGAGGCTGCTTCGAATTTAGTTGCTGGTACTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGCGGTGGCAACTGGGACAGAGAGACAGTTAGTCGCGCTCTTCGGGCAGCTTTTAATAATCCAGAGCGTGCTGTTGATTACTTGTATTCTGGAATTCCTGAAGCTGCAGAAATTGCTGAACCAGTTGCACATTTTCCAGCTAGTCAGACTACTGAAACAAGTGGGGCCACCACTGGAGCTGCTCCTGGAGTGCCTAACTCATCTCCCTTAAATATGTTTCCACAGGAGGCAATATCTGGTGCTGATGCTGGTATTGGATCTCTTGACTTCCTTAGAAATAATCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTTTACAGCCCGTGCTTCAGGAGCTTGGAAAGCAGAATCCCAATCTTTTAAGAATGATTCAAGAGCATCATGCTGAGTTTCTCCAGTTAATTAATGAACCAGTTGAGGGTTCTGAAGGTGATATATTTGACCAGCCTGAGCATGATATGCCTCATTCCATCAATGTGACGCCTGCTGAGCAGGAAGCAATTGGAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCTGTTATAGAGGCATTCTTGGCATGTGATCGGGACGAGCAATTGGCAGCCAACTATCTGTTGGAGAATGCTGGAGATTTTGAAGATTAA 1116 0.4507 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSEDGFLVVMLSKSKTLGSAGASSAQPASNPMTNVSASNSTPAAEPPVQTQAADNRTSATEVKTTNVPTDTYGEAASNLVAGTNLEQTIQQIMDMGGGNWDRETVSRALRAAFNNPERAVDYLYSGIPEAAEIAEPVAHFPASQTTETSGATTGAAPGVPNSSPLNMFPQEAISGADAGIGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPNLLRMIQEHHAEFLQLINEPVEGSEGDIFDQPEHDMPHSINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1875 371 SMART CBM 244 287 IPR006636 -
Dere11g1875 371 Gene3D - 237 302 IPR036353 GO:0003684|GO:0006289|GO:0043161
Dere11g1875 371 SMART ubq_7 1 75 IPR000626 GO:0005515
Dere11g1875 371 Pfam UBA/TS-N domain 327 362 IPR015940 -
Dere11g1875 371 Pfam UBA/TS-N domain 148 186 IPR015940 -
Dere11g1875 371 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Dere11g1875 371 CDD UBA1_Rad23_plant 142 191 - -
Dere11g1875 371 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 146 189 IPR015940 -
Dere11g1875 371 SUPERFAMILY UBA-like 306 368 IPR009060 GO:0005515
Dere11g1875 371 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 325 365 IPR015940 -
Dere11g1875 371 Gene3D - 318 366 - -
Dere11g1875 371 Gene3D - 1 77 - -
Dere11g1875 371 FunFam UV excision repair protein RAD23 1 80 - -
Dere11g1875 371 CDD Ubl_Rad23 1 74 - -
Dere11g1875 371 FunFam UV excision repair protein RAD23 B 237 302 - -
Dere11g1875 371 SUPERFAMILY UBA-like 145 195 IPR009060 GO:0005515
Dere11g1875 371 Gene3D - 141 191 - -
Dere11g1875 371 SUPERFAMILY XPC-binding domain 244 309 IPR036353 GO:0003684|GO:0006289|GO:0043161
Dere11g1875 371 FunFam UV excision repair protein RAD23 homolog 318 366 - -
Dere11g1875 371 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Dere11g1875 371 NCBIfam UV excision repair protein Rad23 1 370 IPR004806 GO:0006289
Dere11g1875 371 FunFam UV excision repair protein RAD23 homolog 141 191 - -
Dere11g1875 371 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 360 - -
Dere11g1875 371 Pfam XPC-binding domain 246 301 IPR015360 GO:0003684|GO:0006289|GO:0043161
Dere11g1875 371 SMART uba_6 148 188 IPR015940 -
Dere11g1875 371 SMART uba_6 327 364 IPR015940 -
Dere11g1875 371 PRINTS DNA repair protein Rad23 signature 272 294 IPR004806 GO:0006289
Dere11g1875 371 PRINTS DNA repair protein Rad23 signature 338 352 IPR004806 GO:0006289
Dere11g1875 371 PRINTS DNA repair protein Rad23 signature 353 368 IPR004806 GO:0006289
Dere11g1875 371 PRINTS DNA repair protein Rad23 signature 321 337 IPR004806 GO:0006289
Dere11g1875 371 MobiDBLite consensus disorder prediction 81 125 - -
Dere11g1875 371 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1875 Dere-ChrDere11 32652965 32657460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1875 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 1.81e-06 45.8