Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1873 ATGATGGATCAGTGCAAGAAATCCTCCATTTCGGGGCAGTCGTACAATTCTCTCTACGTCAATCCCCTCACTGAACTCAGGCACAGCCGTAGCTGCAGCGACTATGGCCGCTTGGCCTCCAAAGGTGACAACTTTGAAGATTTCACGCACAGAAAAATTTCAACTGATAATAAAGAGAATGCCACGCCCAACAAGAAAGAAATTGCTGACAAGGAAAATGCAGAGCCCATGAATGGGTCTTCTTCTTTGCCCAAACACTTCCCAAAGTCCAAGTCTTTGTCCACAGACAGGATTTTGAAGCCAAACTCGCTTCAGTTCTGTATGCAAGTGAACGAGCCCGAAAAGGCTTTTGGGTCCAAGATATGGGATTCTGTGTATTCAGAAAATTTGAGCTCTTTAAATATTTGGGATTACTCTGATTCAGAGGCAGCCCCAGCTTCGTCATGGGCAACATTGCCCAATAAGTCTTTGATCTGTAGGCCGTTGCCTATAGATATTGGAAGGTGTACATGTGTCATTGTGAAGGAAGCAAAGCCAGAAGGACTATCTGGGGGAACTATGTTTTCGCTTTATACCTATGAAGGTCAGGGACGCCAGAATAGGAAACTAGCTGTTGCTCATCACAAGAGGCGGAATGGGAGGTCTGAGTTCATCGTAGCTCAGAATGTAAAAGGTCTATTGTCCAATTTTGATGATAGTTTTCTTGGGACAGTGACAGCTAACCTTATGGGTTCAAAATACCAAATCTGGGATCAGGGGTATCATCATAATTCCCATGATAAACAGCCAAAACCACCTCTTGCTGTCGTGATGTTTATACCTACAGTAGCAACATGTACAGGAAGTTACAGAAGCATGAGGGCATATGTACCCAAGCATCAATCTTTGTCCCTAAAGAACACAACCCAGATACAACATATCAAAGGACTGCCCATAGGTTGGGAGGGAAAGTTGGACAAAGTCCATCAACTATTCTCAAGGGATCCGCTTTACAACAAGAATTCAAAGCAATTTGAACTTGACTTTAAAGATAAAGGAAGAGCAGGACTCAGAATCCAAAGATCAGTAAAAAATTTCCAGCTAACTTTGGAGGAGAATGGGCGGCAGACAATCCTTCAGCTAGGTAGAGTTGAAAAATCAAAATTTGTTATGGATTACAGATATCCTTTGACAGGTTACCAGGCGTTTTGCTTATGTTTAGCTTCCATTGATACAAAGCTTTGTTGCACCTTCAGAAGCCCAGTTGTATTTAGTTCGATAGTGTTTTTCACAGCATGCCAACTTCTTAACATTTGGACTCTGTTTCTTACCGAGTCAAAAGAAAAGACAGGACTCACTCTGCATGCTAGTAGTGTATGCCTTTCCCCCATTTCAATTCTTTCACGATATCTTGTATTTAAGAAGCTTAATATCAGCCATTTACAATTCAAACCCGTCTTTAATCTACAAATGGAAGTTTAA 1461 0.4182 MMDQCKKSSISGQSYNSLYVNPLTELRHSRSCSDYGRLASKGDNFEDFTHRKISTDNKENATPNKKEIADKENAEPMNGSSSLPKHFPKSKSLSTDRILKPNSLQFCMQVNEPEKAFGSKIWDSVYSENLSSLNIWDYSDSEAAPASSWATLPNKSLICRPLPIDIGRCTCVIVKEAKPEGLSGGTMFSLYTYEGQGRQNRKLAVAHHKRRNGRSEFIVAQNVKGLLSNFDDSFLGTVTANLMGSKYQIWDQGYHHNSHDKQPKPPLAVVMFIPTVATCTGSYRSMRAYVPKHQSLSLKNTTQIQHIKGLPIGWEGKLDKVHQLFSRDPLYNKNSKQFELDFKDKGRAGLRIQRSVKNFQLTLEENGRQTILQLGRVEKSKFVMDYRYPLTGYQAFCLCLASIDTKLCCTFRSPVVFSSIVFFTACQLLNIWTLFLTESKEKTGLTLHASSVCLSPISILSRYLVFKKLNISHLQFKPVFNLQMEV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1873 486 PANTHER TUBBY-RELATED 38 408 - -
Dere11g1873 486 Pfam Tub family 160 405 IPR000007 -
Dere11g1873 486 MobiDBLite consensus disorder prediction 75 91 - -
Dere11g1873 486 MobiDBLite consensus disorder prediction 50 73 - -
Dere11g1873 486 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Dere11g1873 486 PRINTS Tubby superfamily signature 234 258 IPR000007 -
Dere11g1873 486 PRINTS Tubby superfamily signature 388 410 IPR000007 -
Dere11g1873 486 PRINTS Tubby superfamily signature 367 386 IPR000007 -
Dere11g1873 486 Gene3D Tubby Protein; Chain A 151 410 IPR025659 -
Dere11g1873 486 MobiDBLite consensus disorder prediction 50 91 - -
Dere11g1873 486 SUPERFAMILY Tubby C-terminal domain-like 146 410 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1873 Dere-ChrDere11 32643120 32646400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1873 20 304 TUB Transcription Factor Family AT1G16070 49.655 4.79e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere11g1873 Tub 1.6e-39 CL0395