Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1853 ATGATCCGTCGCTGCTCTCACTTGTTTTCCCTTCTCCCTCTTAGGAGGTGCCTCGCTTTGGCCTTCGTTCACTCGCCTCTCCGGCTTCTTCATCAGTCTCGCACGACGATAAGCTTTGCTTCGGTATACTCTCTCTCTCTAAATTTCTACGGATTCAAAGCTGAAGCTATGAAGGTGTTCAAGATTAATGGAAGCACCCTTTCTCTTGCGCTTTTCACTGATGTCACCAATTCAAAGGAACTCCTGGAAAGTATGCAAGCTGCGACGTTGGAACCAGAAGTTGCATTCCTCAATGCTTTACTTATTCCAGATATTTTTCCTGTTCTAGCGGCTGCACACAAGACACTAATTGCCAAGTCACGGGATTCTTTGACAACACGCACTCTTCATTCAGAGCTGGTTTACAATTACTCAGGATCCAAGCATATTACAGAATCATTGAAAAGATGCGGCATCTCTGATACTACAACTTATATCCTTGCTGCTCGATTTGGTGCTACTCCTGAGGAGATGAAAGCCGTAGAGAAGTTGATTAATGGAAAAGAGATTGACCTGGAGGAGCTGGAAGGGAAAGCAAACCAAGCCCAGATACAAAAGCATTACAAGATATCTGGCTCGGAACTTGGTGTGTCGTCACTTGCAGATGCAATCACTTGCCGTATAGCTGCTCGTGATGCTTTGTTGGATGATCTTGATTCTAACATTTCTGTGCACTCCAACACAAGTGGGATGAAGAAGCTCAGATTTAACATAGAGGGTAAGCCCCTTGCCGGTCGTGAAAATAAAAATGCATCAAAATCCTTCAGGATGGGAATGAAGAGGGGATCAGATGGACTAAAGACATTTGGAAGATCACTGAAAAGTGGGGTCACCTGGGCAGTGTTCCCAGAAGATCTTAAAGTATCAGAGACTAAAATATTTGACCCTCAAGACAAGACCCTTTTGCTGTGGAACAAGTTTTTTGAGCTTCTATGTATTATTTCTGTATCTTGTGATCCCCTCTTCTTTTATCTTCCTTACTTCAATCTCAAATCATATTGCCTTGCCATCGATAATCGCCTCGCATTCACTGCTATTGTGCTGAGAACAATACTTGACTCTATCTATCTCATCCGAATCGGTTTTCAATTCCGAACCGCTTATATTGCACCTTCATCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCCTAAAAAGATTGCCAAGAGATATCTAGGACGTTACTTCATTGTTGACTTCAGTGCTGTGCTACCTCTGCCTCAGATTGTTGTGGCGAACTATCTTCGGAAAGCAAAAGGTTTAGAGGTTTTGGCCACGAAAACGACTCTGCTGAGAGTTGTCATCCTCCAATATCTTCCAAGATTTGGACGCTTTATCCCTTTAGCTACAGAGGTTAAAAAGACAGCTGCTGTTTTTTCTGATAATGCACTCGTTGGTGCCACATACTATTTGGTTTGGTATATGCTTGCTAGTCATATAGTGGGGTCTGCCTGGTACTTATTAGCCATTGAACGTAATGACACGTGCTGGCAGCAGGCTTGTGCTGCTGCTCAAGGATGTATACCACATTTCTTGTACTGTGAGAGTTCGAATAAGCACTATCCAGGGTATGATGCTTGGAGAAAAGTCAACCAGGACATTCTTAACAAGAATTGTGGTGCTGGAGGTGACGATCCACCATTTGATTATGGAATCTACACTCGAGTTATAGAGAAGGGCATCACTGCATCCAAGGATATGTGGACTAAATTCTTTTTATGTTTCTGGTGGGGGCTGCAAAATGTGAGCACACTTGGCCAGGGGCTTGACACTAGTACTTACATTGGAGAGGCTTTGTTTTCCATATTTATATGCATTTTGGGGCTTGTCCTTATTGCTCTTCTGATTGGAAAAGTGCAGACCTACCTTCAATCAATCACTGTTCGTCTTGAGGAAATGAGGATCAAAAGGCGTGACTCTGAGCAGTGGATGCATCATCGCGTGCTTCCTCAAGAGCTAAGGGAAAAAGTGAGACGCTATGATCAATACAAATGGCTGGAAACTCGAGGAGTAGATGAAGAGACCTTGGTGCAGAGTCTTCCGAAGGATCTGAGGAGGGATATCAAACGGCATCTTTGCTTGAATTTGGTTAGAAGGGTTCCACTCTTTGCCAACATGGATGAACGCCTGCTCGATGCCATTTGTGAGCGTTTGAAGCCTAGTTTGTACACAGAGGGCACATACATTGTGAGGGAAGGAGATCCAGTTGTTGAGATGCTCTTCATCATACGAGGTCGTTTAGAGAGTGTCACCACAGATGGTGGAAGGAGTGGATTTTTCAACAGAGGTCTTCTCAAAGAAGGTGACTTCTGCGGAGAAGAGCTTCTGACTTGGGCATTGGACCCTAAATCTGCAGCTAACTTGCCATCGTCTACACGGACAGTGAAAGCTATCAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGATGTTGAAGTTTGTTGCTTCACAGTTCAGGCGCCTCCATAGCAGACAGGTTCAGCAGACCTTCCGTTTCTACTCACAGCAGTGGAGAACATGGGCTGCAACTTTCATTCAAGCTGCGTGGCGGCGGTATTCCAAGAGGAAAATTGCAGAGATGCACCAAATGGAGGAAGAAGATTATGGTTCTGATGATGATGGAAGAGCCTTGATTACACGCACTGAAAGTTCTAGTTCATCAAGGAGTACTGGACTTGGTTCAGCCATCTATGCTTCCCGTTTTGCTGCTAAAGCCCTTCGTGGCCACAGGCTTCGTACACTTCAAAAGCCCCCAGAACCTGACTTCAGTGCTTACTACCAGAGCGATTGA 2832 0.4467 MIRRCSHLFSLLPLRRCLALAFVHSPLRLLHQSRTTISFASVYSLSLNFYGFKAEAMKVFKINGSTLSLALFTDVTNSKELLESMQAATLEPEVAFLNALLIPDIFPVLAAAHKTLIAKSRDSLTTRTLHSELVYNYSGSKHITESLKRCGISDTTTYILAARFGATPEEMKAVEKLINGKEIDLEELEGKANQAQIQKHYKISGSELGVSSLADAITCRIAARDALLDDLDSNISVHSNTSGMKKLRFNIEGKPLAGRENKNASKSFRMGMKRGSDGLKTFGRSLKSGVTWAVFPEDLKVSETKIFDPQDKTLLLWNKFFELLCIISVSCDPLFFYLPYFNLKSYCLAIDNRLAFTAIVLRTILDSIYLIRIGFQFRTAYIAPSSRVFGRGELVIDPKKIAKRYLGRYFIVDFSAVLPLPQIVVANYLRKAKGLEVLATKTTLLRVVILQYLPRFGRFIPLATEVKKTAAVFSDNALVGATYYLVWYMLASHIVGSAWYLLAIERNDTCWQQACAAAQGCIPHFLYCESSNKHYPGYDAWRKVNQDILNKNCGAGGDDPPFDYGIYTRVIEKGITASKDMWTKFFLCFWWGLQNVSTLGQGLDTSTYIGEALFSIFICILGLVLIALLIGKVQTYLQSITVRLEEMRIKRRDSEQWMHHRVLPQELREKVRRYDQYKWLETRGVDEETLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVVEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSAANLPSSTRTVKAINEVEAFALEAEMLKFVASQFRRLHSRQVQQTFRFYSQQWRTWAATFIQAAWRRYSKRKIAEMHQMEEEDYGSDDDGRALITRTESSSSSRSTGLGSAIYASRFAAKALRGHRLRTLQKPPEPDFSAYYQSD 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1853 943 Pfam Ion transport protein 316 643 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Dere11g1853 943 Gene3D - 323 642 - -
Dere11g1853 943 SUPERFAMILY cAMP-binding domain-like 646 836 IPR018490 -
Dere11g1853 943 FunFam Cyclic nucleotide-gated ion channel 1 714 832 - -
Dere11g1853 943 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 298 936 - -
Dere11g1853 943 Gene3D Jelly Rolls 714 834 IPR014710 -
Dere11g1853 943 SUPERFAMILY Voltage-gated potassium channels 309 638 - -
Dere11g1853 943 SMART cnmp_10 716 847 IPR000595 -
Dere11g1853 943 Pfam Kinase binding protein CGI-121 72 225 IPR013926 -
Dere11g1853 943 Coils Coil 171 198 - -
Dere11g1853 943 Gene3D CGI121/TPRKB 54 227 IPR036504 -
Dere11g1853 943 Gene3D Helix hairpin bin 644 707 - -
Dere11g1853 943 FunFam Cyclic nucleotide-gated ion channel 1 643 707 - -
Dere11g1853 943 SUPERFAMILY PF0523-like 62 204 IPR036504 -
Dere11g1853 943 ProSiteProfiles IQ motif profile. 852 881 IPR000048 GO:0005515
Dere11g1853 943 Pfam Cyclic nucleotide-binding domain 737 825 IPR000595 -
Dere11g1853 943 ProSiteProfiles cAMP/cGMP binding motif profile. 716 799 IPR000595 -
Dere11g1853 943 CDD CAP_ED 716 847 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1853 Dere-ChrDere11 32454981 32466015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1853 228 938 Ion Channels AT1G15990 66.350 0.0 961