Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere11g1851 | ATGGACAGCCAAACAGAGAAGAGACAGAGACAGAGACAGACAGAAACAGAGGATCAAAGTCACCAACGTAGTTCATCTTCATCACCTCCTCGTCTTGTGTTGGATCTAAGCCTCTCTAACTCCTCCTCCTCCTCTGAATCTCCCCATGGCAGGATTTTCTCATGCAACTACTGCCAGAGGAAATTCTACAGCTCGCAGGCACTAGGGGGACACCAAAACGCACACAAGCGTGAGAGAACTTTGGCAAAAAGAGGACACAACAACAACAACAACAAAGTTGGTGCTTCAGTTTCTGCAGAATTTGGACAGAGGTATTATTATTCATGTATGGCTTCTCTTCCTTTGCATGGCTCCTATAACAGACCGCTGGGGATTCACCTCCATTCCATGATTCACAAGCCCCACCATCTTCAGCCTCCCTTTTCTGGCTTCTCTCGTTTCCAGAAGGTTTCATTCGGAAATTTAAATGTTTGGACAGAAACAGAGTCATCTTTGGCTTCTGGGACTCCAAGGTTTCCAAAGCTTTCTCCAAGGCCTGTCGCAGAGGATCTGCAGAAGCTTGACTTGTCCCTCAAACTATAA | 582 | 0.4639 | MDSQTEKRQRQRQTETEDQSHQRSSSSSPPRLVLDLSLSNSSSSSESPHGRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHNNNNNKVGASVSAEFGQRYYYSCMASLPLHGSYNRPLGIHLHSMIHKPHHLQPPFSGFSRFQKVSFGNLNVWTETESSLASGTPRFPKLSPRPVAEDLQKLDLSLKL | 193 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere11g1851 | 193 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 55 | 75 | IPR013087 | - | |
| Dere11g1851 | 193 | Gene3D | Classic Zinc Finger | 32 | 105 | - | - | |
| Dere11g1851 | 193 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
| Dere11g1851 | 193 | MobiDBLite | consensus disorder prediction | 20 | 49 | - | - | |
| Dere11g1851 | 193 | SUPERFAMILY | beta-beta-alpha zinc fingers | 50 | 80 | IPR036236 | - | |
| Dere11g1851 | 193 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 53 | 80 | IPR013087 | - | |
| Dere11g1851 | 193 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 4 | 156 | IPR044246 | GO:0009788 | |
| Dere11g1851 | 193 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere11g1851 | Dere-ChrDere11 | 32439634 | 32440215 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere11g1851 | 51 | 137 | C2H2 Transcription Factor Family | AT1G80730 | 63.043 | 6.33e-28 | 103 |
Transcription factors information