Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1843 ATGGATTATTCATCATGGGTCAACACGTCGTTGGATCTCAACATAAGACCTCATCATCACATGCTTCATGAAGAAGTTCCCGTAACTGTGTGTTTAATATTTCAGAAAAAGGAGGTAGAAAGCAAAATTTTCTCATCTGGGAAGAAAGCTTCTGTAAAAGAAGAGCCATATCAGACGAGTGGTGCGTTGGAGGAGGAACTGAAGAGGGTGAGCGCAGAAAACAAGAAGTTGACAGAAATGCTCACAGAGATGTGTGAGAATTACAATTCCCTGAGAAGACACTTGGCCGAATACATGAGGAACAATCCTCAAAAGGATCTCAATATCATCCCATCAAAGAAAAGGAAGCCTGAAAGCAGCATCATCGACAACAACAACAACAACAATACTAATCAGATGGGGGTTAATGGAAACTCTGAGAGCTGCTCAACTGATGAAGAATCATGCAAGAAACCTAAGGAAGACACCATCAAAGCAAAAATTTCCAGAGCTTATGTCAGGACGGAACCATCTGATACTAGCCTTATTGTGAAGGATGGATATCAATGGAGGAAATATGGGCAAAAGGTGACCAGAGATAACCCTTCTCCAAGAGCATACTTCAAATGCTCTTTTGCTCCAAGCTGTCCTGTCAAAAAGAAGGTCCAAAGGAGTGTGGATGATCAATCTATTCTGGTTGCAACATATCAAGGGGAGCACAATCATCCTCACCCTTCTCAGACTGAGACAACATCAGGTTCCAGCCGTTTTTTAAGCCAAGGTTCAGTACCATGTTCTTCAGCATCTTTGAGCTCTTCCTCTGCAGCAACAACAATAACCTTTGACTTGACAAAATCCAAGCCCAACACCAACAACTTTAGTACCAGCACCAAGAACCCTAAACCAAAACTTGATTCACCAGAAGTCCCGCAGGTTTTGGTGGAACAGATGGCTTCTTCGTTGACCAAAGATCCCAATTTCAGAGCAGCACTTGTTGCTGCCATTTCAGGAAGAATGTCCCACAAGAATTAA 1011 0.4253 MDYSSWVNTSLDLNIRPHHHMLHEEVPVTVCLIFQKKEVESKIFSSGKKASVKEEPYQTSGALEEELKRVSAENKKLTEMLTEMCENYNSLRRHLAEYMRNNPQKDLNIIPSKKRKPESSIIDNNNNNNTNQMGVNGNSESCSTDEESCKKPKEDTIKAKISRAYVRTEPSDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVDDQSILVATYQGEHNHPHPSQTETTSGSSRFLSQGSVPCSSASLSSSSAATTITFDLTKSKPNTNNFSTSTKNPKPKLDSPEVPQVLVEQMASSLTKDPNFRAALVAAISGRMSHKN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1843 336 Coils Coil 60 87 - -
Dere11g1843 336 MobiDBLite consensus disorder prediction 277 295 - -
Dere11g1843 336 Pfam WRKY DNA -binding domain 178 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere11g1843 336 ProSiteProfiles WRKY domain profile. 172 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere11g1843 336 MobiDBLite consensus disorder prediction 230 252 - -
Dere11g1843 336 SMART WRKY_cls 177 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere11g1843 336 Gene3D WRKY domain 160 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere11g1843 336 MobiDBLite consensus disorder prediction 121 143 - -
Dere11g1843 336 FunFam WRKY transcription factor 40 162 239 - -
Dere11g1843 336 MobiDBLite consensus disorder prediction 107 148 - -
Dere11g1843 336 MobiDBLite consensus disorder prediction 277 299 - -
Dere11g1843 336 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 30 333 IPR044810 GO:0003700
Dere11g1843 336 SUPERFAMILY WRKY DNA-binding domain 174 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1843 Dere-ChrDere11 32327847 32329585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1843 52 336 WRKY Transcription Factor Family AT1G80840 54.110 2.21e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere11g1843 WRKY 3e-23 CL0274