Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1837 ATGGATGGTTGCCAAAAATCCTCCATTTCAGGTCAATCATATAATCCTCTCTACGTCAATCCCCTCACTGAGCTCAGGCACAGCCGTAGCTGCAGCAGCGAATATGGCCGTGTCGCCACTAAAGGTGACGACTTTGAAGATTTCACACACCGAGGCACGAAAACCTTCACGGATAACAAAGAGAATGCGACGCCTAACAAGAAAGAAATCTCAGTTTCTTCTGATGGTGACAAGGAAAACGCGGTGCCCAAACTGTTCTTGAATTCCAGGTCTTTGTCCACAGATAGGATCTTGAAGCCTTCTTCGCTCCAGTTCTGTATGCAAATGAGCGATTCTGAAAAGGCTTTTGGGTCTAAGATATGGGATCGTTTTGATTCGGAGAATTCAAGCTCTTTGAAAGTTTGGGACTATTCTGATTCTGAGGCAGCTCCGGCTTCATCCTGGTCGACTCTGCCTAATAAGTCTTTGATCTGTAGACCATTGCCTGTAGATATTGGAAGATGTACATGTGTTATTGTGAAGGAAGCATCGCCAGAAGGACTATCTGGTGGCACATTGTTCTCTCTTTATACCTATGAAGGTCAGGGACGACAGAATAGGAAACTGGCTGTGGCATACTACAGGAGGCGAAATGGGAGGTCTCAGTTCACCATAGCTCAGAATGTAAAAGGACTTATGTCCAATTCAGATGATGGTTTTCTTGGAACTGTAACGGCTAACTTCATGGGTTCAAAGTACCACATATGGGATCAGAAATATCGTCATGATTCCCGGGGTAAAAAGCCAAAACCACCTCTTGCTGTTGTGGCATTTATACCTACCATAGCAACATGTACAGGGAGTTACAGAAGCATGAGGGCATACGTACCCAAGCATCAATCTATGTTACTGAAGAACACAAGTCAGGGACAGCATATCAAAGGACTGCCAATGAATTGGGAGGAAAAGTTGGAGAAAGTCCATCAGCTATTCTCAAGGGTCCCAATTTACAACAAGATTTCAAAGCAATATGAACTTGACTTCAGAGATAAAGGCAGGCCAGGACTTGGAATCCAAAGATCAGTAAAAAATTTCCAGCTGACTTTGGAGGAGAATGGGAGGCAGACTATCCTGCAGCTAGGTAGGGTGGCAAAATCAAAGTTTGTTATGGACTACAGATATCCTCTGACGGGTTATCAGGCATTCTGCTTATGTTTGGCTTCCATTGATACAAAACTTTTCCAAAGTTCAAAACTTTCGTTGTTTCTAAAGAAAACCCACCTCTCAGTTCTCCCAGCAAGCGAAGCTCTGCTATCAATGGACGAGTTTTTGGCTCTAATTTGCCCTAACTCTCCATCCGTATGGGATGGAAACGGATTCTCACAGTGTTTTGAAGACATATATCCTTATTGTTTTGGACTGAACGCAGTGACTATTATTATAATTGTTGTGCTTGGATTCACTCAGAAGAGCAGCCGAGGAATTCATAGATCAGATGCCCAGATAACCTTTGTGGAGAAATTTGTCCTGCATCTTGTACCAGCTGTTGCAACATGTTTTTCATTGTTGGACATCATTTTTCTGTGGAAGAGAGAACTTAAGAGGCACATTGTTGGATATCATAAGTGGTTTTATAGCTGTTCTGAGTTGATGGTGTGGACAAATATCATTCTCTTCTCAAGATGTGCCAGCAGTCATTACATAGTCTGCAACTTTGTCTTATGTTACTGGTGGATTCTGAAGCCAGTATTCTGGATCTTCCATTTGGTTACTAAGTTCCCAATGCTGGAGATTCCAATATGTATCATGGAGAGCTTTATTTTTCTCTTGAATATCACATTTGGCATAGCTATCAATGTAATAAGGGTAAAGAGATTATCTTCCAAAAACAGTTTATTTGAAGATCCACTTCTTTCCAATGACAAGAACCTTGAGGAAGGTTGCCATCGTGACCTTGGAAATACTGGGAACTTTTGGGATTTGATGACTTTCAAATTCATAAATCCTGTAATGAATCATGGTGTGGTCAAGCAACTGGACTCTGAAGATCTGCTGCAGTTTCCTCAGGATATGGATCCTTCTTCCTGTCATGATATAATTTTAAGCTGCTGGCAAGCACAACTGAGCAATAATGGTTCAAACCCATCTTTACTTAGAGCAGTTTGTAGTGCATATGGATGGCCATATCTCCGCCTGGGTTTGTTGAAGGTGGTTAATGATTGTATTGGTTTTGCGGCACCATTGCTTCTCAATAAGCTGATCCAGTTTCTTCAACAAGGTTCAGAGAATTTTGATGGATATTTACTTGCTATATCCTTGGGTCTCACATCTATAATCAAATCCTTTTTAGATACACAATATACTTTTCATCTTTCTAAGCTGAAGCTAAAGCTACGGTCTAGTATCATGACTATAATCTATCGGAAGTGTCTATGCATCAACCTAGCAGAACGTTCCAAATTCTCTAATGGAGAAATTCAGACATTTATGTCTGTAGATGCTGACCGAACTGTCAACATGTGTAATAGTTTCCATGATGCGTGGAGCTTGCCCTTACAAATTGGAGTGGCGCTTTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTGTTGATACCAGTGAATAAATGGATATCAAAATTGATCGCAAGTGCTACAGAGAAAATGATGAAGCAGAAGGATGAAAGGATACGGAGGACAGGAGAACTTTTGACTTATATTCGCACTTTGAAGATGCATGGATGGGAACTTCTTTTTTCTGGTTGGCTGATGGAGACAAGATCTTCTGAAGTGAAACACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCTACTACACCAACTCTCTTTTCTCTTTTCACATTTGGACTCTATGCATTGATGGGACACCAACTTGATGCTGCAATGGTTTTCACTTGCCTGGCTTTGTTTAACACACTAATTTCACCCCTGAATTCATTCCCCTGGGTGATAAATGGATTGATTGACGCCATTATATCCTCCAAACGGTTGAGCAGGTTTCTGTCTTGTCCTGAAAAACAATCTAAGGCAAAAGTGACCAATTCATGTTCCTTGCCATTCCTTAGTAAACAACCTGACTCTTTACAAGGTTTGGCTGTCTTTGTTCAAGATGCATATTGTACTTGGTCAAGCAGTGATGACGAAGCATTGAATTTGGTGTTGAATCACGTGAGTCTAAGCCTGTTAAGGGGTTCCTTTGTTGCAGTGATAGGAGAGGTTGGTTCAGGTAAATCATCTTTGTTATACTCAATTCTTGGAGAAATGCGGCTTGCTAATGGATCAATCTATTCCAATGGATCAGTGGCATATGTACCACAGGTCCCATGGATTTTATCTGGAACAATACGTGACAACATAATATTTGGGGAAAATTATGATCCCCAAAGGTATGCAGAAACTGTGCGTGCTTGTGCACTAGATGTTGATATCTCATTAATGGTTGGAGGTGACATGGCTTACATTGGGGAAAAAGGAGTCAACTTATCAGGTGGACAGAGAACTCGTCTTGCTTTAGCAAGGGCATTGTATCGTGGCTCTGATTTGGTTATGCTTGATGATGTCCTGAGTGCAGTTGATGCACAAGTTGCTCAGTGGATCTTACACAATGCCATTCTAGGTCCTCTTATGCATGGAAAAACTCGATTGCTCTGTACCCATAATGTCCAGGCTATATCTTCTGCTGATATGGTCGTTATAATGGACAAAGGACATGTAAAGTGGATGGGAAGTCCAACTAATCTCCCAGTCTCTTCATATATATCATTCTCCCCATTGAATGAACTTGATTCAGATGTACAGAATAAAGGACAATCTTGCAGCACAAATTCATCTTCCAAAATGAAAGAGCTTCCAGATAGAGAAATTAAGCATGATGTAGAGGGGGCAGAGGAGATCATTGAAATTGAGTTGAGGAAAGAGGGCAAAGTAGAAGTTGGAGTTTATAAGAATTACGCTATGTTCACTGGCTGGTTCATTACAGTTGTAATTTGCCTATCAGCTATTCTGATGCAAGCTTCTCGTAATGGAAATGATTTATGGTTGTCATTTTGGGTTGATACTACAAAAAGCAGACAAACAAGATACTCTGTGTCCTTCTATCTGGCTATACTATGCCTCTTTTGCATCATAAATTCTTTTCTCACGTTGGTAAGGGCGTTCTCTTTTGCATTTGGTGGCTTACAAGCTGCAACTAAAGTGCACAATAGAATGCTCAGTAAACTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCAGGTGGAAGAATACTTAACAGGTTTTCCTCGGATCTTTATACAATAGACGATTCTCTTCCATTCATTGTGAACATTCTCCTAGCTAATTTTGTTGGCCTTTTGGGCATTGCAGCAGTTTTGTCGTATGTTCAGGTCTTTTTCTTACTCCTGCTATTGCCATTTTGGTATATCTACAGTAAACTTCAGTTTTTCTACAGGCCAACATCAAGAGAACTACGACGACTGGATAGTGTTTCTCGTTCTCCGATATATACATCTTTTACTGAAACACTTGACGGATCATCAATTATTAGGGCATTTAAATCTGAGGACTTATTTTTCACGAAATTCATTGAACATGTAACATTGTATCAGAAGACTTCTTACACAGAGATAGCAGCTAGTTTATGGCTTTCCTTACGTCTTCAATTATTAGCTGCATTTATCATCTCATTTATTGCCCTGATGGCCGTGGTTGGAGCTAATGGCAGTCTGCCTATCAATTTCGGTACCCCTGGGCTGGTAGGATTGGCACTCTCATATGCAGCTCCAATTGTTTCCCTGTTGGGAAGCTTTTTAACAAGTTTCACTGAAACAGAAAAGGAAATGGTTTCAGTTGAAAGAGTCCTTGAATATATGGACACTCCTCAGGAAGAACTAGCAGGATGCCTATTGTTGAACCCAGATTGGCCAAATCAAGGAGTAATTGAGTTCCACAATGTTACTTTGAAATATATGCCGTTTTTGCCACCTGCACTCTGCAATCTTAGTTTTAAAATTGCTGGAGGGACACAGATTGGAATTATTGGAAGAACAGGTGCCGGAAAATCTAGTGTGTTGAATGCTCTTTTCCGCCTTACTCCAATATGTACAGGCTCCATCCTCATTGATGGGATAAACATTAATAGTATTCCTGTCAGAGAATTACGAGCTCATTTGGCTGTTGTTCCTCAGACTCCATTCCTATTCGAAGGATCATTAAGAGATAATCTAGATCCATTCAAAAAGCATGATGACTTGAAAATTTGGAAGGCTTTGGAGAAGTGCCATGTGAAAGAGGAAGTAGAAGCAGCGGGAGGACTAGACATTCTAATAAAGGAATCTGGGATGTCATTTTCGGTTGGCCAACGGCAGCTTCTTTGCCTTGCACGTGCTCTTCTCAAATCTTCCAAGGTTCTCTGTTTGGATGAATGCACAGCCAATGTTGACACTCAAACTGCTTCACTGCTACAAAGTACCATATCTGATGAATGCAGGGGCATAACAGTAATTACAATAGCTCACCGGATTTCGACAGTTTTGAACATGGACAACATCTTAATTCTTGACCATGGCAACCTGGCTGAACAAGGAAACCCACAGGTTCTTTTGGACCATGACTCCTTATTTTCACGTTTTGCTAAAGCTTCATCCATGTAA 5694 0.4078 MDGCQKSSISGQSYNPLYVNPLTELRHSRSCSSEYGRVATKGDDFEDFTHRGTKTFTDNKENATPNKKEISVSSDGDKENAVPKLFLNSRSLSTDRILKPSSLQFCMQMSDSEKAFGSKIWDRFDSENSSSLKVWDYSDSEAAPASSWSTLPNKSLICRPLPVDIGRCTCVIVKEASPEGLSGGTLFSLYTYEGQGRQNRKLAVAYYRRRNGRSQFTIAQNVKGLMSNSDDGFLGTVTANFMGSKYHIWDQKYRHDSRGKKPKPPLAVVAFIPTIATCTGSYRSMRAYVPKHQSMLLKNTSQGQHIKGLPMNWEEKLEKVHQLFSRVPIYNKISKQYELDFRDKGRPGLGIQRSVKNFQLTLEENGRQTILQLGRVAKSKFVMDYRYPLTGYQAFCLCLASIDTKLFQSSKLSLFLKKTHLSVLPASEALLSMDEFLALICPNSPSVWDGNGFSQCFEDIYPYCFGLNAVTIIIIVVLGFTQKSSRGIHRSDAQITFVEKFVLHLVPAVATCFSLLDIIFLWKRELKRHIVGYHKWFYSCSELMVWTNIILFSRCASSHYIVCNFVLCYWWILKPVFWIFHLVTKFPMLEIPICIMESFIFLLNITFGIAINVIRVKRLSSKNSLFEDPLLSNDKNLEEGCHRDLGNTGNFWDLMTFKFINPVMNHGVVKQLDSEDLLQFPQDMDPSSCHDIILSCWQAQLSNNGSNPSLLRAVCSAYGWPYLRLGLLKVVNDCIGFAAPLLLNKLIQFLQQGSENFDGYLLAISLGLTSIIKSFLDTQYTFHLSKLKLKLRSSIMTIIYRKCLCINLAERSKFSNGEIQTFMSVDADRTVNMCNSFHDAWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISKLIASATEKMMKQKDERIRRTGELLTYIRTLKMHGWELLFSGWLMETRSSEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSKRLSRFLSCPEKQSKAKVTNSCSLPFLSKQPDSLQGLAVFVQDAYCTWSSSDDEALNLVLNHVSLSLLRGSFVAVIGEVGSGKSSLLYSILGEMRLANGSIYSNGSVAYVPQVPWILSGTIRDNIIFGENYDPQRYAETVRACALDVDISLMVGGDMAYIGEKGVNLSGGQRTRLALARALYRGSDLVMLDDVLSAVDAQVAQWILHNAILGPLMHGKTRLLCTHNVQAISSADMVVIMDKGHVKWMGSPTNLPVSSYISFSPLNELDSDVQNKGQSCSTNSSSKMKELPDREIKHDVEGAEEIIEIELRKEGKVEVGVYKNYAMFTGWFITVVICLSAILMQASRNGNDLWLSFWVDTTKSRQTRYSVSFYLAILCLFCIINSFLTLVRAFSFAFGGLQAATKVHNRMLSKLINAPVQFFDQTPGGRILNRFSSDLYTIDDSLPFIVNILLANFVGLLGIAAVLSYVQVFFLLLLLPFWYIYSKLQFFYRPTSRELRRLDSVSRSPIYTSFTETLDGSSIIRAFKSEDLFFTKFIEHVTLYQKTSYTEIAASLWLSLRLQLLAAFIISFIALMAVVGANGSLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERVLEYMDTPQEELAGCLLLNPDWPNQGVIEFHNVTLKYMPFLPPALCNLSFKIAGGTQIGIIGRTGAGKSSVLNALFRLTPICTGSILIDGININSIPVRELRAHLAVVPQTPFLFEGSLRDNLDPFKKHDDLKIWKALEKCHVKEEVEAAGGLDILIKESGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDTQTASLLQSTISDECRGITVITIAHRISTVLNMDNILILDHGNLAEQGNPQVLLDHDSLFSRFAKASSM 1897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1837 1897 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 649 1894 - -
Dere11g1837 1897 SMART AAA_5 1687 1871 IPR003593 GO:0016887
Dere11g1837 1897 SMART AAA_5 1076 1250 IPR003593 GO:0016887
Dere11g1837 1897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1061 1261 IPR027417 -
Dere11g1837 1897 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1046 1273 IPR003439 GO:0005524
Dere11g1837 1897 CDD ABCC_MRP_domain2 1659 1878 - -
Dere11g1837 1897 ProSitePatterns ABC transporters family signature. 1797 1811 IPR017871 GO:0005524|GO:0016887
Dere11g1837 1897 FunFam ATP-binding cassette (ABC) transporter, putative 1650 1894 - -
Dere11g1837 1897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1655 1893 IPR027417 -
Dere11g1837 1897 Pfam ABC transporter 1067 1199 IPR003439 GO:0005524
Dere11g1837 1897 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Dere11g1837 1897 PRINTS Tubby superfamily signature 366 385 IPR000007 -
Dere11g1837 1897 PRINTS Tubby superfamily signature 233 257 IPR000007 -
Dere11g1837 1897 PRINTS Tubby superfamily signature 387 409 IPR000007 -
Dere11g1837 1897 FunFam ABC transporter C family member 5 1304 1644 - -
Dere11g1837 1897 CDD ABC_6TM_MRP7_D1_like 725 1010 - -
Dere11g1837 1897 SUPERFAMILY Tubby C-terminal domain-like 145 406 IPR025659 -
Dere11g1837 1897 Gene3D Tubby Protein; Chain A 153 403 IPR025659 -
Dere11g1837 1897 CDD ABCC_MRP_domain1 1048 1249 - -
Dere11g1837 1897 MobiDBLite consensus disorder prediction 49 75 - -
Dere11g1837 1897 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1340 1626 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere11g1837 1897 Pfam Tub family 159 404 IPR000007 -
Dere11g1837 1897 FunFam Multidrug resistance-associated protein ABC domain protein 701 1019 - -
Dere11g1837 1897 CDD ABC_6TM_MRP7_D2_like 1339 1638 - -
Dere11g1837 1897 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 727 1002 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere11g1837 1897 Pfam ABC transporter transmembrane region 726 990 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere11g1837 1897 Pfam ABC transporter transmembrane region 1341 1586 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere11g1837 1897 Pfam ABC transporter 1679 1825 IPR003439 GO:0005524
Dere11g1837 1897 Gene3D - 1649 1892 IPR027417 -
Dere11g1837 1897 Gene3D ABC transporter type 1, transmembrane domain 1307 1644 IPR036640 GO:0005524|GO:0016020
Dere11g1837 1897 Gene3D ABC transporter type 1, transmembrane domain 699 1020 IPR036640 GO:0005524|GO:0016020
Dere11g1837 1897 SUPERFAMILY ABC transporter transmembrane region 1336 1643 IPR036640 GO:0005524|GO:0016020
Dere11g1837 1897 FunFam ABC transporter C family member 13 1026 1283 - -
Dere11g1837 1897 MobiDBLite consensus disorder prediction 49 78 - -
Dere11g1837 1897 SUPERFAMILY ABC transporter transmembrane region 715 1018 IPR036640 GO:0005524|GO:0016020
Dere11g1837 1897 ProSitePatterns ABC transporters family signature. 1174 1188 IPR017871 GO:0005524|GO:0016887
Dere11g1837 1897 Gene3D - 1040 1286 IPR027417 -
Dere11g1837 1897 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1661 1894 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1837 Dere-ChrDere11 32273953 32301120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1837 58 302 TUB Transcription Factor Family AT1G16070 54.440 3.75e-84 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere11g1837 ABC_membrane 1.1e-35 CL0241