Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1832 ATGAAAGAGAGCGCAGCAAAAGGCGCTTATATAAGTTTGGACTTTGCTAGTTGTCTTCAATTCTCATTCTCTCAAGTCTCAACAAGAAGACGCTCCACAAAAACGCGTTTCTGTTTGAGCTTGGAATCTCCATCTCCGAAACGTATTCTGGTTGGACCCGCCATGGCCAGACCCCAACAACGCTATCGTGGTGTACGACAGAGGCACTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTCTTGAAAACCAGGATATGGCTAGGGACATACGAAACGGCAGAAGATGCAGCAAGAGCATACGACGAAGCAGCAAGGCTTATATGTGGCCCAAAAGCAAGAACCAACTTCCCCTTCAATCCCACTCACCCTCACTCTTCTTCTTCTTCTTCTTCTTCCTCCAGCCTTCTCTCTCCAGCTTTAACAGCCAAGCTTCACAAGTGTCACATGGCGTCCCTTGCTCTTCAAATGAAGAAACCATCCCAGAAACTGCCTCAACAACAACCACAGACCTCCGTTGTCCCACTTTCCTCTGACAATGCCGTTGCCAGCGCGAGCTCAGAGACAGGTTTCCGGTGGCCGGAACATAGACACGAGGAGGAGGAGCAGCAGCAGCAGAAGTTTCAGACAGCGCTTGAAGATGATCACATTGAGCAGATGATTCAGGAGCTGCTTCATTATGGCTCAATTGAGCTTTGCAGCTCTCTTGGCTCTCCTTAG 720 0.4986 MKESAAKGAYISLDFASCLQFSFSQVSTRRRSTKTRFCLSLESPSPKRILVGPAMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTYETAEDAARAYDEAARLICGPKARTNFPFNPTHPHSSSSSSSSSSLLSPALTAKLHKCHMASLALQMKKPSQKLPQQQPQTSVVPLSSDNAVASASSETGFRWPEHRHEEEEQQQQKFQTALEDDHIEQMIQELLHYGSIELCSSLGSP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1832 239 CDD AP2 60 118 IPR001471 GO:0003700|GO:0006355
Dere11g1832 239 MobiDBLite consensus disorder prediction 159 187 - -
Dere11g1832 239 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Dere11g1832 239 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
Dere11g1832 239 MobiDBLite consensus disorder prediction 191 209 - -
Dere11g1832 239 MobiDBLite consensus disorder prediction 159 209 - -
Dere11g1832 239 Gene3D AP2/ERF domain 60 119 IPR036955 GO:0003700|GO:0006355
Dere11g1832 239 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Dere11g1832 239 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Dere11g1832 239 Pfam AP2 domain 61 109 IPR001471 GO:0003700|GO:0006355
Dere11g1832 239 FunFam Ethylene-responsive transcription factor 2 60 120 - -
Dere11g1832 239 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 55 198 - -
Dere11g1832 239 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1832 Dere-ChrDere11 32228410 32229511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1832 55 236 AP2-EREBP Transcription Factor Family AT5G25190 59.677 1.60e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere11g1832 AP2 1.6e-11 CL0081