Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1828 ATGATTGATCTTCTTATTCTCTTCCTACCCACTTGGGTGTTAAGCATCTCTCTTTCAGTTTCTCATTCTTCTGCAAATGCAGAAGCTCAATCTCCAGGTACGGAGGAGGTTAGAGTAGGGCACCGCCAGAGTTTGAACAAGAGATTTCTAGTAGCAATTATTGCTTGTTCTGCTCTTCTTGTTGGAATCTTATTATTTTTATCATATATCTGGTTTCGTCGACATAAAATCTTTAAAGGCTCCGGTGCTAAAAGCCCTGAGACCATCGAGGATGCAAAAGGGGTGTCACTTGACCTTGTTAATGTTAAAGTTGATTACTCAAAAATGGCAGATAAGAAGAGTTCAGTTGCTATATTTGACTTTCAGTTGTTAGAGGTTGCAACAAATGGATTTGCCAAAAATAATATTCTGTATGAGAGTGGTTCTCGGCTAGTGTACAGAGCCTGTTTTGATGAGCATTTGAAGGCAGCTGTGAAGAAAGCAGATAGCAATGCTGATAGAGAATTTGAGAATGAAGTGAATTGGTTGAGCAAGATTCGGCATCAGAATATTATAAAACTTCTTGGTTACTGTATTCATGGTGATTCAAGGTTTCTTGTTTATGAAATGGTGGAGAATGGATCATTGGAAACTCAGTTGCACGGGCCTGATCGTGGATCGTCTTTAAATTGGTATCTCCGGTTAAGAATTGCTGTTGATGTTGCCAGAGCATTAGAATATCTACATGAGCACGCTAATCCTCCTCTGGTTCATAGAGACCTAAAATCTTCTAATGTTCTTCTGGATTCTCACTTTAATGCGAAGGTATCAGATTTTGGACTTGCTGTAAGTTCTGGAATGCAAGACAAGAACATAAAGATGTCGGGAACTTTGGGCTATGTGGCACCAGAGTACATATCACATGGTAAGCTAACTGATAAGAGTGATGTATATGCTTTTGGGGTTGTCCTTCTAGAGCTTCTAACAGGAAGAAAAGCCATGGACAAGATGTCCTCAGATCAATATGAATCCATTGTCACATGGGCCATGCCTCAGCTAACTGACAGATCAAAGCTTCCAAGTATTTTAGATCCTGTAATCAGAAACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTACTTTGTGTACAACCAGAACCAAGTTATAGGCCGCTGATAACAGATGTCCTGCACTCCCTCATCCCTTTGGTACCCACCGAGCTGGGAGGGTCGATTAGAGTTTCAGAATTAGTTCACGCTGAGAATTCGCACTGA 1266 0.4068 MIDLLILFLPTWVLSISLSVSHSSANAEAQSPGTEEVRVGHRQSLNKRFLVAIIACSALLVGILLFLSYIWFRRHKIFKGSGAKSPETIEDAKGVSLDLVNVKVDYSKMADKKSSVAIFDFQLLEVATNGFAKNNILYESGSRLVYRACFDEHLKAAVKKADSNADREFENEVNWLSKIRHQNIIKLLGYCIHGDSRFLVYEMVENGSLETQLHGPDRGSSLNWYLRLRIAVDVARALEYLHEHANPPLVHRDLKSSNVLLDSHFNAKVSDFGLAVSSGMQDKNIKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKAMDKMSSDQYESIVTWAMPQLTDRSKLPSILDPVIRNTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPTELGGSIRVSELVHAENSH 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1828 421 Gene3D Phosphorylase Kinase; domain 1 96 203 - -
Dere11g1828 421 Pfam Protein tyrosine and serine/threonine kinase 152 354 IPR001245 GO:0004672|GO:0006468
Dere11g1828 421 Gene3D Transferase(Phosphotransferase) domain 1 204 404 - -
Dere11g1828 421 SMART serkin_6 138 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1828 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Dere11g1828 421 FunFam probable receptor-like protein kinase At1g80640 204 402 - -
Dere11g1828 421 PANTHER OS01G0750732 PROTEIN 22 401 - -
Dere11g1828 421 SUPERFAMILY Protein kinase-like (PK-like) 111 397 IPR011009 -
Dere11g1828 421 ProSiteProfiles Protein kinase domain profile. 131 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1828 Dere-ChrDere11 32208867 32212044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1828 15 343 Receptor kinase-like Gene Family AT1G80640 47.447 1.98e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Dere11g1828 PK_Tyr_Ser-Thr 4.2e-42 CL0016