Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1822 ATGGAAGAGAACGATTTCTTCAACCAGTGCCCCAAGAATAACTCCTTCGACGACGACGAGGAGTTCCTGAGGGAGATCCTTCACCAACCTTCTTTCTCTTCCGAAAGTGATAGTACTCACTCTTCCACTATTCCAAACACCACCGCCACCGCCATGGACGGTGGTGCTGCTGCTGGAGCAACCCCTACTGTCAGCAGCTTATCTTTCGATGACTCCGGCAGCCAGCTCAAACGTAACGGCTCGAGCTCGATCCTCTCCAAACTTGCTAGTTTCTCAGACAAGCCTGTGAGCTCTTCGTCGCCGTCAGCTTATATTCTGTCTTTCGATAACTCAGCGGTGTTACCGGCCACCACAGACGACGGTTATCGAAAACATGAATCTGCGGTGAAGAACATAAATCATGAGCAATTAGACAGTAGTACTGGTGGAGGAGGAGGAGGCACACGTGCTTTGCTAAAACGAACCCTAGAAAACCATAATAGTGAGCCAAAGGCCAATCAAGGAACAAAGAAATCTAGAAGTTCATCTGAGACGTTGGATCACATAATGGCTGAGAGAAAAAGGAGACAGGAACTCACTGAGAAGTTTATTGCACTCTCAGCTACTATACCTGGTTTGAAGAAGATTGACAAGGCCTCCATACTTAGCGAGGCAATCAATCACGTGAAGCAGCTTCAAGAACGAGTGAGAGAACTAGAGGAACAAAACAAGAAGATAAGTGTGGAGTCAGTTTCATACGTAAAGAAATCATCCCACCTCTACAGTACTGACGATCAAGACACAACCTCTTGTGAAATGAGCTCTGAGGATTGCTTCAGAATTAATGAAACACTGCCTGAAGTTGAAGCAAGAGTGTTACACAAAGAGGTTGGAGACGAATACAACATACCAATGAAGGAACTTGTGAAAAAGCTGAGAATGACACTGTTGAAATCACTTGACAATCAGGAGTAA 954 0.4549 MEENDFFNQCPKNNSFDDDEEFLREILHQPSFSSESDSTHSSTIPNTTATAMDGGAAAGATPTVSSLSFDDSGSQLKRNGSSSILSKLASFSDKPVSSSSPSAYILSFDNSAVLPATTDDGYRKHESAVKNINHEQLDSSTGGGGGGTRALLKRTLENHNSEPKANQGTKKSRSSSETLDHIMAERKRRQELTEKFIALSATIPGLKKIDKASILSEAINHVKQLQERVRELEEQNKKISVESVSYVKKSSHLYSTDDQDTTSCEMSSEDCFRINETLPEVEARVLHKEVGDEYNIPMKELVKKLRMTLLKSLDNQE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1822 317 SMART finulus 182 231 IPR011598 GO:0046983
Dere11g1822 317 MobiDBLite consensus disorder prediction 157 179 - -
Dere11g1822 317 MobiDBLite consensus disorder prediction 29 50 - -
Dere11g1822 317 MobiDBLite consensus disorder prediction 27 80 - -
Dere11g1822 317 Coils Coil 215 242 - -
Dere11g1822 317 MobiDBLite consensus disorder prediction 61 80 - -
Dere11g1822 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 243 IPR036638 GO:0046983
Dere11g1822 317 Gene3D - 165 242 IPR036638 GO:0046983
Dere11g1822 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Dere11g1822 317 Pfam Helix-loop-helix DNA-binding domain 181 226 IPR011598 GO:0046983
Dere11g1822 317 PANTHER BHLH TRANSCRIPTION FACTOR 27 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1822 Dere-ChrDere11 32162506 32165422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1822 167 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 51.639 3.20e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere11g1822 HLH 2.2e-09 No_clan