Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1821 ATGAATCTGTACGACATTAGTCTTGGGCGTCGTTTAGATGTGCAACCGCCATCTATAAAAGCCAAACCCGTCTTCTCCAAAACTGAAACGATCACATTTCTGACGCAGCCTATGTCAACTAGTTCGAGTACAGTAATAGCAGGACCGTCGTCGGACGAGGTCATCCGGCCACCAGCTATGGTGGTTTCCGGCGAGCCTAGTGAATTTTCGTCCTCCTCTTTCTCCTTGTCCAATTTAACTCAGGGGTTTCCTTTCTCTTCTGGAAACCCTAGAATCGAGGAGACTAGAGGCGTCATGCATCTATTTCGCGAGGATCACACTTCTTCATCGGCTTCTGATCTTCCTGTTGGACGGAAGCCACTTGTTTGCGTGCTTGGAGTGCCAAATCACATGACATATGCGGACTTCTGCCAGTTCTGTGGCTCATTTATTCAGCATATCTTAGAGATGCGGATTGTCAGAAATGACGGGATGGAGGACCAGTACAGTGCTTTAATTCGGTTTGATGACCAAGACTCCACAGATGGTTTCTTCAAGCATTATAATAGGCGCCGTTTCTCATCTCTAGAGGTGGAGGTTTGCCGTGTTCTTTTCACATTTGATGTGCAGTACACTGGCTCAATTGAACATGCACAAGCATCTAATGCTAGTTCAACTGAGCAGCCTTCCTGTCCAGTCTGCCTGGAGCGGTTGGATCAAGATACAGGTGGAATTCTTACAACTATATGCAATCATTCTTTCCATTGTTCCTGTATTTCAAAATGGGCTGATTCATCTTGTCCAGTATGCCGGTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAGAACCTTTGCATATGTCTTATTTGTGGGTTTGTTGGCTGTGGAAAATATAAAGCAGGACATGCCAAAATACACTGGATAGAGACCCAGCATTGCTACTTCCAAGAAGTGGAAACACAGCGAGTATGGGACTATGTGAAAGACAACTATGTTCATAGACTAATCATGTCCAAAACTGATGGGAAGTTGGTTGAGTTAAACTCTCACTGTGAGCATACAGGAAATGAGTGTGGTAGTTGCAGCTGTGAAGATAATGCTATGAGCGAGGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAACGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATTATACTTTGAGTCCTTACTACAAGAAGTAAAAGAAGAAACAGAAAGAGAAATTTCCAAAGCTGTTGAGAAGGCAGTCACTGTTAAACTGCAGAAGACACAGTCCAAGCTTGACAGATGTTACAAAGAGAAGAAATTCCTGGATGATCTTAATGAGAATCTTATAAAAAATCAGGAGATCTGGAAAGCCAAGATACTTGAGATTGAAGAGAGGGAGAAAAAAGCTTTAAAACCGAAGGACGATAAAATAAGGGCCCTGGAAGAGCAGCTTAGAGATCTCATGGTTTGCCTTGAAAATGGGAAGACGGTTGAACAGCTGCCCGTGCCAAATGAAATTTAA 1527 0.4276 MNLYDISLGRRLDVQPPSIKAKPVFSKTETITFLTQPMSTSSSTVIAGPSSDEVIRPPAMVVSGEPSEFSSSSFSLSNLTQGFPFSSGNPRIEETRGVMHLFREDHTSSSASDLPVGRKPLVCVLGVPNHMTYADFCQFCGSFIQHILEMRIVRNDGMEDQYSALIRFDDQDSTDGFFKHYNRRRFSSLEVEVCRVLFTFDVQYTGSIEHAQASNASSTEQPSCPVCLERLDQDTGGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLCICLICGFVGCGKYKAGHAKIHWIETQHCYFQEVETQRVWDYVKDNYVHRLIMSKTDGKLVELNSHCEHTGNECGSCSCEDNAMSEAILNSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEETEREISKAVEKAVTVKLQKTQSKLDRCYKEKKFLDDLNENLIKNQEIWKAKILEIEEREKKALKPKDDKIRALEEQLRDLMVCLENGKTVEQLPVPNEI 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1821 508 Coils Coil 447 467 - -
Dere11g1821 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 266 IPR013083 -
Dere11g1821 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 344 IPR013083 -
Dere11g1821 508 ProSiteProfiles Zinc finger RING-type profile. 224 264 IPR001841 -
Dere11g1821 508 PANTHER BRCA1-ASSOCIATED PROTEIN 65 499 - -
Dere11g1821 508 Pfam Zn-finger in ubiquitin-hydrolases and other protein 275 334 IPR001607 GO:0008270
Dere11g1821 508 Pfam BRCA1-associated protein 2 115 211 IPR011422 -
Dere11g1821 508 CDD RING-H2_BRAP2 222 265 IPR047243 -
Dere11g1821 508 ProSiteProfiles Zinc finger UBP-type profile. 258 351 IPR001607 GO:0008270
Dere11g1821 508 CDD RRM_BRAP2_like 122 203 - -
Dere11g1821 508 SUPERFAMILY RING/U-box 217 265 - -
Dere11g1821 508 Pfam Ring finger domain 223 264 IPR001841 -
Dere11g1821 508 Coils Coil 389 427 - -
Dere11g1821 508 SMART ring_2 224 263 IPR001841 -
Dere11g1821 508 SUPERFAMILY RING/U-box 240 339 - -
Dere11g1821 508 SMART Zf_UBP_1 274 323 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1821 Dere-ChrDere11 32145538 32149808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1821 220 264 C3H Transcription Factor Family AT1G72220 46.809 6.92e-07 49.7