Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1780 ATGGCTTTTTGCCCAATATTTTTCTGTGCAAAGGGTTCGGATCGAAAAGCAAGAGGGAAGAAAGCACCTATATGGAGGGTCTTTTCTTTGAAGGAACTACACTCAGCAACAAATAATTTCAATTATGATAACAAGCTTGGAGAAGGGGGATTTGGCAGTGTCTACTGGGGCCAGCTTTGGGATGGGTCACAAATTGCAGTGAAAAGATTGAAAGCTTGGAGCGACAAAGCAGACATGGAATTTGCTGCTGAAGTTGAAATATTGGCAAGAGTACGACACAAGAATCTTCTTAGTCTACGTGGCTATTGTGCTGAAGGACAGGAAAGGCTAATTGTATATGATTATATGCCAAATTTGAGCCTACTCTCTCATCTTCATCGACAGCACTCTGCAGAATGCCTTCTTGATTGGAACCGACGGATGAATATTGCAATAGGGTCAGCTGAGGGGATTGCATATCTTCACCACCAAGCAACACCACACATAATACACAGAGATATCAAAGCAAGCAATGTGTTATTGGATGCAGACTTCCATGCCCAGGTTGCTGATTTTGGTTTTGCCAAGTTGATTCCTGATGGTGCAACCCACGTGACTACAAGAGTTAAGGGAACCCTTGGCTACCTTGCACCGGAATATGCCATGCTGGGAAAGGCATCTGAGAGTTGTGATGTCTACAGTTTTGGAATTCTCCTGCTAGAACTTGCTAGTGGCAAGAGACCAATTGAAAAAATGAGTACCTCAATGAAGCGATCAATAGCTGATTGGGCACTACCGTTGGCTTGTGAGAAGAAATTTGGTGTACTTGCAGATCCAAAGCTAAAGGGTAACTATGTGGAGGAAGAGCTTAAAAGAATTATTCTTGTTGCACTTGTATGTGCTCAAAGTCAGCCTGAGAAGAGGCCCACCATGCTTGAGGTGGTAGAGCTATTGAAGGGAGAATCTAAAGATAAGTTTTCTCAGCTAGAAAACAATGAACTGTTCAAAAGCCCTCCTACTCTAGAAAACAATGATGGGGCATCAGCTGCTGAAGACAGTTCAGACTTCATCTCAGAAGAGAAGGAATCAACATTTGAGGTGAAAGAAAGTAGTGGGCTATAA 1101 0.4287 MAFCPIFFCAKGSDRKARGKKAPIWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKAWSDKADMEFAAEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHRQHSAECLLDWNRRMNIAIGSAEGIAYLHHQATPHIIHRDIKASNVLLDADFHAQVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELASGKRPIEKMSTSMKRSIADWALPLACEKKFGVLADPKLKGNYVEEELKRIILVALVCAQSQPEKRPTMLEVVELLKGESKDKFSQLENNELFKSPPTLENNDGASAAEDSSDFISEEKESTFEVKESSGL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1780 366 MobiDBLite consensus disorder prediction 347 366 - -
Dere11g1780 366 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1780 366 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Dere11g1780 366 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Dere11g1780 366 MobiDBLite consensus disorder prediction 322 366 - -
Dere11g1780 366 MobiDBLite consensus disorder prediction 324 344 - -
Dere11g1780 366 Gene3D Phosphorylase Kinase; domain 1 11 115 - -
Dere11g1780 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Dere11g1780 366 Pfam Protein tyrosine and serine/threonine kinase 42 311 IPR001245 GO:0004672|GO:0006468
Dere11g1780 366 PANTHER OS01G0253100 PROTEIN 21 318 - -
Dere11g1780 366 CDD STKc_IRAK 46 313 - -
Dere11g1780 366 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Dere11g1780 366 SUPERFAMILY Protein kinase-like (PK-like) 23 311 IPR011009 -
Dere11g1780 366 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
Dere11g1780 366 ProSiteProfiles Protein kinase domain profile. 40 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1780 Dere-ChrDere11 31706197 31708703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1780 7 314 Trihelix Transcription Factor Family AT1G70460 47.962 4.02e-93 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Dere11g1780 PK_Tyr_Ser-Thr 3.3e-45 CL0016