Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1765 ATGGCAGAGTGGGAAATAATAATGGTAGAAACTCATCTTCATGGGACTCTCCATGCCACCATCTACGAGGTGGATAAGCTAGGCGCTGAACATGAAGGCAATATTTTCAGCATGCTCAAGCAAAAAATCGAGGACACAGTTGGCGTAGGACAGGGATCATCACAAATCTACGCAACCGTTGATCTGGAGAAAGCAAGACTGGGAAGAACCAGAGTTTTAGAAAACACTAATTCAAGTCTAAGGTGGCAAGAGTCTTTTCACATCTACTGCGCCCACGTGGCATCCAACGTTATCTTCACCATCAAAGGCGTCAATAAGATTGGTGCAACCTTAATCGGACGAGCCTACGTCCCCGTGGACGACATCATCGGCGGCGAGCCCTACGACGAATGGCTCGAAATCTTAAACGAGGACAGAGAACCAATCGGCTCAAAAATCCACGTTAGGCTCCAATACTTTGATGTCACAAAAGACAAAAATTGGAACCGTGGGATTAGGAGTCCTAAATACCCAGGGGTACCCTACACTTTCTTCTCGCAGAGAAAAGCTTGTAGGGTCACGTTGTACCAAGACGCTCACGTGCCCGACGATTTCATCCCCAGAATACCCCTCTCTGGAGGGAAAACCTACGAGCCTCATAGATGTTGGGAGGATGTTTTTGACGCACTTAGTAACGCAAAGCACTTGATTTACATCACTGGTTGGTCCGTTTACACTGAGATTAAACTAGTGAGGGATTCTAATAGACCAAAGGATGGGGGTCACGTGACATTGGGAGAACTTCTGAAGAAGAAAGCAAACGAGGGTGTTAAGGTTTTAATGCTTGTTTGGGACGACAGAACTTCTGTCAGTTTGTTAAAGAAAGATGGGTTAATGGCAACACATGATGAAGAAACTGAGATATATTTCCAAGACACTGAAGTGAACTGCGTTTTATGCCCACGTGATCCTGATAATGGAGGAAGTATAATTCAGGACATGCAAATTTCTACTATGTTCACTCATCATCAAAAGATTGTCGTTGTAGACAGCGAGCTTCCAGGACGAGGGTCGGATAAGAGAAGAATAGTGAGCTTCGTCGGAGGGCTTGATCTATGCGATGGAAGATACGACACTGCTTTTCACTCACTTTTCAGAACGCTGGACACGGTTCATCGCGATGACTTTCACCAACCTAACTTCCCCGGTGCTGATATCACCAAAGGTGGGCCCAGGGAGCCATGGCACGACATTCATTCGCGTCTTGAAGGACCTATTGCTTGGGATGTGTTGTTTAATTTTGAACAGAGATGGAAGAAGCAAGGCGGGAAAGATATTCTTGTGTCACGTGGAGAGCTCGAGGAGTTGTTTATTCCGCCGTCGCCGGTGATGTTCCCGGAGGATCACGAGACGTGGAATGTTCAGTTGTTCAGATCGATCGACGGTGGCGCCGCCTTCGGGTTCCCGGAGAGCCCGGAGGAAGCAGCCGACGCGGGGCTTGTGAGCGGGAAGGATAATATCATAGACAGAGGGATCCAGGATGCTTATATTCATGCCATAAGACGAGCGAGGAAGTTTATATACATAGAGAATCAGTACTTTTTAGGAAGCTCGTATGCATGGAGTGCTGAAGATGGGGATATAAAGCCAGAGGACATTAATGCACTGCATGTTATACCGAAGGAACTATCACTGAAGATTGTGAGTAAGATTGAAGCAGGAGAAAGGTTCACGGTGTACGTGGTGGTGCCCATGTGGCCGGAGGGGATACCGGACAGCGGGTCGGTGCAGGCGATATTGGACTGGCAGAAGAGGACGATGGAAACGATGTACAAAGACATTGTTGAGGCTCTGAGAGCGAAGGGAATAAGGGAAGATCCTAGGAAGTACTTAACGTTCTTCTGTCTGGGAAACAGGGAAGTGAAACGAGATGGAGAGTATGAACCTCAAGAACAACCAGAAGCAGATTCAGGTTATGCGAGAGCCCAGGAGGCACGTCGCTTCATGATTTATGTTCATACCAAGATGATGATAGTGGATGATGAGTACATAATCGTTGGATCAGCGAACATAAACCAGAGATCAATGGATGGAGCGAGGGACTCAGAGATAGCCATGGGAGCTTATCAACCCTATCATTTAGCAACCAACAGGGAGCCTGCAAGAGGTCAGATCCATGGCTTCCGAATGGCACTGTGGTACGAGCACCTTGGGATGCTTCACGAGTCCTTCAACCACCCAGAAAGCGAAGAATGCGTCGAGAAGGTGAACGAGATGGCTGAAAAGTACTGGCAACTATACTCTGATGACTCATTCGAAGACGACCTTCCTGGCCACTTGCTGCGTTATCCTGTTCGGGTTTCCAGTGATGGACAAGTCCAAGAACTCCAAGGTTTTGAATTCTTCCCTGACACTCAGGCTCGTATTCTTGGTGCCAAGTCCGACTACTTGCCACCAATTCTTACTACATAA 2451 0.4749 MAEWEIIMVETHLHGTLHATIYEVDKLGAEHEGNIFSMLKQKIEDTVGVGQGSSQIYATVDLEKARLGRTRVLENTNSSLRWQESFHIYCAHVASNVIFTIKGVNKIGATLIGRAYVPVDDIIGGEPYDEWLEILNEDREPIGSKIHVRLQYFDVTKDKNWNRGIRSPKYPGVPYTFFSQRKACRVTLYQDAHVPDDFIPRIPLSGGKTYEPHRCWEDVFDALSNAKHLIYITGWSVYTEIKLVRDSNRPKDGGHVTLGELLKKKANEGVKVLMLVWDDRTSVSLLKKDGLMATHDEETEIYFQDTEVNCVLCPRDPDNGGSIIQDMQISTMFTHHQKIVVVDSELPGRGSDKRRIVSFVGGLDLCDGRYDTAFHSLFRTLDTVHRDDFHQPNFPGADITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDILVSRGELEELFIPPSPVMFPEDHETWNVQLFRSIDGGAAFGFPESPEEAADAGLVSGKDNIIDRGIQDAYIHAIRRARKFIYIENQYFLGSSYAWSAEDGDIKPEDINALHVIPKELSLKIVSKIEAGERFTVYVVVPMWPEGIPDSGSVQAILDWQKRTMETMYKDIVEALRAKGIREDPRKYLTFFCLGNREVKRDGEYEPQEQPEADSGYARAQEARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLATNREPARGQIHGFRMALWYEHLGMLHESFNHPESEECVEKVNEMAEKYWQLYSDDSFEDDLPGHLLRYPVRVSSDGQVQELQGFEFFPDTQARILGAKSDYLPPILTT 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1765 816 ProSiteProfiles C2 domain profile. 1 132 IPR000008 -
Dere11g1765 816 Gene3D C2 domain 13 165 IPR035892 -
Dere11g1765 816 Gene3D Endonuclease Chain A 485 707 - -
Dere11g1765 816 SMART pld_4 331 369 IPR001736 GO:0003824
Dere11g1765 816 SMART pld_4 661 688 IPR001736 GO:0003824
Dere11g1765 816 PIRSF PLD_plant 3 816 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Dere11g1765 816 Pfam Phospholipase D C terminal 735 806 IPR024632 -
Dere11g1765 816 CDD C2_plant_PLD 12 153 - -
Dere11g1765 816 FunFam Phospholipase D 472 707 - -
Dere11g1765 816 FunFam Phospholipase D delta 206 448 - -
Dere11g1765 816 Pfam Phospholipase D Active site motif 331 369 IPR001736 GO:0003824
Dere11g1765 816 Pfam Phospholipase D Active site motif 662 688 IPR001736 GO:0003824
Dere11g1765 816 SUPERFAMILY Phospholipase D/nuclease 156 441 - -
Dere11g1765 816 Gene3D Endonuclease Chain A 205 447 - -
Dere11g1765 816 SMART C2_3c 16 131 IPR000008 -
Dere11g1765 816 SUPERFAMILY Phospholipase D/nuclease 488 746 - -
Dere11g1765 816 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 661 688 IPR001736 GO:0003824
Dere11g1765 816 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 155 IPR035892 -
Dere11g1765 816 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 331 369 IPR001736 GO:0003824
Dere11g1765 816 Pfam C2 domain 17 134 IPR000008 -
Dere11g1765 816 PANTHER PHOSPHOLIPASE D 12 804 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1765 Dere-ChrDere11 31512713 31518203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1765 8 816 Phospholipase D Gene Family (Wang group) AT1G52570 76.044 0.0 1306
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1667 12 29162237 29165645 Dere11g1765 11 31512713 31518203 CCT
Dere11g1765 11 31512713 31518203 Dere12g1667 12 29162237 29165645 ECH
Dere04g0561 04 5614550 5617483 Dere11g1765 11 31512713 31518203 ECH
Dere11g1765 11 31512713 31518203 Dere11g1765 11 31512713 31518203 ECH