Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1764 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGACAACGTCACTGGGGCTCATGGGTCTCTGAGATTCGCCATCCTTTGTTGAAAAGGAGGGTGTGGCTAGGGACGTTTGAAACTGCAGAAGAAGCGGCTAGAGCATATGATGAAGCAGCCATTTTGATGAGCGGTAGAAACGCCAAAACAAACTTCCCTGTGGCTACCAATAATGACTATAATAATAATAATAATAAACAGATGGGAAATCACAATTCTTCTTCTTCTTCTTCCACAACTTTCTCAGAAGCTCTCAGTGCGAAGCTTCAGAAGTGCTGTAAATCCCCATCGCCATCTCTCACTTGCTTAAGGCTTGACACAGAGAACTCCCACATCGGAGTGTGGCAGAAGCGAGCAGGGCCTCGCTCTGACTCCAACTGGGTCATGATGGTGGAGTTGGAAAGGAAGAATCTTGGAGGTTCCAAGAGCACGTCGAAATCGCCGGCGCCGGACACGTCACCGGAGAAGGCGAAATCAGAAGAAGGGAATGGTGAGTTGAATGAGGAGCAGAAGATGGCCTTGCAGATGATAGAAGAACTTCTGAATAGGAACTAA 585 0.4735 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVATNNDYNNNNNKQMGNHNSSSSSSTTFSEALSAKLQKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSNWVMMVELERKNLGGSKSTSKSPAPDTSPEKAKSEEGNGELNEEQKMALQMIEELLNRN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1764 194 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Dere11g1764 194 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Dere11g1764 194 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Dere11g1764 194 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Dere11g1764 194 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Dere11g1764 194 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Dere11g1764 194 MobiDBLite consensus disorder prediction 148 162 - -
Dere11g1764 194 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Dere11g1764 194 MobiDBLite consensus disorder prediction 145 194 - -
Dere11g1764 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 160 - -
Dere11g1764 194 MobiDBLite consensus disorder prediction 163 177 - -
Dere11g1764 194 Coils Coil 173 193 - -
Dere11g1764 194 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Dere11g1764 194 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1764 Dere-ChrDere11 31501652 31502900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1764 1 194 AP2-EREBP Transcription Factor Family AT1G15360 66.337 3.01e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere11g1764 AP2 8e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1764 11 31501652 31502900 Dere11g1764 11 31501652 31502900 ECH