Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1746 ATGAGTGCTTCTTCACTCGCGTGCCAAGTTTATGGTGATGAAAAGTCTCCTATGAAGCATAGAGAAGTTTATACTTCCTCCGGTATAGAATGCGAATACCCATCATTGAAGAAGCCAAGAATTTCAGCAACATTCCTAAATTCTGGGGCACAGATGCTACTAAACGAAGCAAGGACCCGCAATTTCAAGACTCAACTCTGCAGAAGATTCAGACAAGGAATCTGTACTCTTGGTTCCAGATGTAGCTTCGCCCATTGCTTAGGAGAACTTAGAAGGCAAGAAATTGGTGGGGACTATAGAACATGTCATGAATCCAAACTTTGCAGAATGTTCTCTCAAGGGAAACAGTGCTCGTATGGATACACCTGTCGTTTCCTTCATGCAAGGCCTCACAGTGTAAATTCAAGAGAGAGTGCAACGGTAGAAGTGATTACTGCTGGACCTGTAGCGCATGGTGAAAGAGAAAATGATCAATTAGAATTCAAGAGTGGGTTTAATGAGAGTTTTGATGCTGAAGTGAATCCAAAGAGAGAGATGCTGAAAACTAAGCTGTGCAATAAGTGGCAGATCAAAGGGTATTGCCCATTTGGAAAGATTTGTCGCTTTGCTCATGGACAAGCAGAATTAGGGAAACTTGATGGCTACTCAACTTCAGAATGCAGGGTAATGCGAACTTCTGCTACTACTACTACAAATGCATCAATCAGTATAGTGGCAACTGGCCCTCTGCTGAAGAAGGAACCGAGTGCCTTAAATTGCAGATTTAAGAAATATGAACTACACAAGATCAGTCGCATCTATGCTGATTGGATTTAA 816 0.4203 MSASSLACQVYGDEKSPMKHREVYTSSGIECEYPSLKKPRISATFLNSGAQMLLNEARTRNFKTQLCRRFRQGICTLGSRCSFAHCLGELRRQEIGGDYRTCHESKLCRMFSQGKQCSYGYTCRFLHARPHSVNSRESATVEVITAGPVAHGERENDQLEFKSGFNESFDAEVNPKREMLKTKLCNKWQIKGYCPFGKICRFAHGQAELGKLDGYSTSECRVMRTSATTTTNASISIVATGPLLKKEPSALNCRFKKYELHKISRIYADWI 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1746 271 FunFam zinc finger CCCH domain-containing protein 15-like 173 211 - -
Dere11g1746 271 Gene3D - 174 211 - -
Dere11g1746 271 ProSiteProfiles Zinc finger C3H1-type profile. 179 207 IPR000571 GO:0046872
Dere11g1746 271 ProSiteProfiles Zinc finger C3H1-type profile. 61 88 IPR000571 GO:0046872
Dere11g1746 271 SUPERFAMILY CCCH zinc finger 102 129 IPR036855 GO:0046872
Dere11g1746 271 Gene3D - 56 142 - -
Dere11g1746 271 SUPERFAMILY CCCH zinc finger 60 91 IPR036855 GO:0046872
Dere11g1746 271 ProSiteProfiles Zinc finger C3H1-type profile. 107 130 IPR000571 GO:0046872
Dere11g1746 271 SMART c3hfinal6 61 87 IPR000571 GO:0046872
Dere11g1746 271 SMART c3hfinal6 104 129 IPR000571 GO:0046872
Dere11g1746 271 SMART c3hfinal6 179 206 IPR000571 GO:0046872
Dere11g1746 271 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 106 127 IPR000571 GO:0046872
Dere11g1746 271 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 62 86 IPR000571 GO:0046872
Dere11g1746 271 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 181 206 IPR000571 GO:0046872
Dere11g1746 271 PANTHER CCCH ZINC FINGER/TIS11-RELATED 57 131 IPR045877 GO:0003729
Dere11g1746 271 SUPERFAMILY CCCH zinc finger 178 210 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1746 Dere-ChrDere11 31265355 31267242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1746 179 223 C3H Transcription Factor Family AT1G68200 50.000 4.52e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere11g1746 zf-CCCH 4e-08 CL0537