Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1721 ATGAGTGGGACTTCGTTGGTGGGCTTGCAGGACCACCTCAAATTGGCGAGGGAATACGCTCTTGAAGGCCTCTATGACAACTCCATCATCTTCTTCGACGGTGCAATTGCTCAGATTAACAAGCACCTAAACACTGTAGATGATCCTTTAATGCGTGCAAAGTGGATTAATGTAAAGAAAGCGCTTTCTGAGGAAACAGAAGTTGTGAAGCAACTAGATGCAGAGAGAAGGGCATTTAAAGAAACCCCTAGTGGTAGTGGCAGACGCTCTTCTTCGCCTCCTATATATGCTAAATCATCATCATTTGTTTTTCAACCATTAGATGAGTATCCTACTTCTTCAAGTGCACCAATGGATGACCCTGATGTATGGAGGCCACCTACTAGAGATACTACAAGTAGAAGGCCCACCAGGTCTGGTCAAGTAGGCACTAGGAAGTCATCACAAGATGGGGCTTGGGCTCGAGGTTCTACTACAAGAACAGGTACAACTAGCCGAGGGGCAAAGGCTGGTGGTGCAAGTAGAGTTAACTCTGGACCCCGGGCGTCGACTGCTGGAAAGAAAGGCGCTGGTTCTGGTTCTGGAAAGTCTAGCAAGGGAGATTCAGTTAATGGTGATGCTGAAGATGGTAAGTCAAAGAAAGGACAATATGAGGGTCCTGATCCTGACTTGGCTGCAATGCTTGAAAGGGATGTATTAGAAAGCTCTCCAGGAGTGAGATGGGATGATGTTGCAGGGCTAACTGAAGCAAAAAGACTTCTAGAAGAAGCCGTTGTGCTTCCCTTGTGGATGCCTGAATATTTCCAGGGGATTAGGAGACCATGGAAAGGCGTTCTCATGTTTGGGCCTCCAGGAACTGGGAAGACGCTGCTAGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCGTCAAAATGGCGTGGAGAGAGTGAGCGTATGGTGCGGTGTCTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATTTTCATTGATGAGATTGATTCTCTGTGTAACGCTAGGGGGGCATCTGGGGAGCATGAATCATCAAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAGTTCTACAAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCAGCCACCAACTTCCCATGGGACATAGACGAGGCACTAAGGAGAAGGCTGGAAAAACGTATATACATTCCTCTTCCAAATTTTGAGAGCCGTAAAGAGCTGATCAGGATCAATTTGAAGACTGTAGAGGTGGCCCCTGATGTAAATATAGATGAAGTGGCTCGTCGGACAGAGGGCTATAGTGGGGATGACCTGACAAATGTCTGTCGTGATGCTTCCCTAAATGGTATGAGGCGTAAGATAGCAGGCAAGACTCGGGATGAGATAAAGAACATGCCCAAAGATGAGATTTCAAAGGACCCTGTTGCCATGTGCGATTTTGAAGAAGCTTTGACGAAGGTCCAACGAAGTGTTTCCCAGGCTGATATTGAACGCCATGAGAAATGGTTTGCTGAATTTGGATCAGCATAA 1581 0.4605 MSGTSLVGLQDHLKLAREYALEGLYDNSIIFFDGAIAQINKHLNTVDDPLMRAKWINVKKALSEETEVVKQLDAERRAFKETPSGSGRRSSSPPIYAKSSSFVFQPLDEYPTSSSAPMDDPDVWRPPTRDTTSRRPTRSGQVGTRKSSQDGAWARGSTTRTGTTSRGAKAGGASRVNSGPRASTAGKKGAGSGSGKSSKGDSVNGDAEDGKSKKGQYEGPDPDLAAMLERDVLESSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALTKVQRSVSQADIERHEKWFAEFGSA 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1721 526 Pfam ATPase family associated with various cellular activities (AAA) 278 415 IPR003959 GO:0005524|GO:0016887
Dere11g1721 526 MobiDBLite consensus disorder prediction 76 222 - -
Dere11g1721 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 523 IPR027417 -
Dere11g1721 526 MobiDBLite consensus disorder prediction 84 112 - -
Dere11g1721 526 FunFam Katanin p60 ATPase-containing subunit A1 416 502 - -
Dere11g1721 526 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 526 IPR028596 GO:0008017|GO:0008568|GO:0051013
Dere11g1721 526 Gene3D - 3 80 - -
Dere11g1721 526 MobiDBLite consensus disorder prediction 133 181 - -
Dere11g1721 526 MobiDBLite consensus disorder prediction 202 222 - -
Dere11g1721 526 SMART AAA_5 274 417 IPR003593 GO:0016887
Dere11g1721 526 FunFam Katanin p60 ATPase-containing subunit A1 236 404 - -
Dere11g1721 526 Gene3D - 416 502 - -
Dere11g1721 526 CDD Kp60-NTD 9 75 - -
Dere11g1721 526 ProSitePatterns AAA-protein family signature. 387 406 IPR003960 GO:0005524|GO:0016887
Dere11g1721 526 Gene3D - 236 517 IPR027417 -
Dere11g1721 526 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Dere11g1721 526 PANTHER AAA DOMAIN-CONTAINING 25 525 - -
Dere11g1721 526 Pfam AAA+ lid domain 437 478 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1721 Dere-ChrDere11 30942517 30946107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1721 230 518 Calmodulin-binding Proteins AT3G56690 40.339 1.04e-50 185