Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1719 ATGTCGCCGGAGAGTACTGTCACCACCAGTCACAGCTCCGCCCAATCCGACGTCGTCGAGTTGAACTTGAAGGAGACTGAGCTCACCCTCGGCCTTCCCGGCACCACAAATGTCACCGGCTCTAAACGTCGCTTCTCACAAACCAATGGCTTTGGCTCATTCTCGTCCTCGACTAATTCCCCCCCACCAAAGGCACAAACGGTGGGGTGGCCGCCGGTGAGGGCGAGCAGGAGGAACGTAATGAGGAACTGCAAGTACGTGAAGGTGGCGGTGGATGGAGCTCCATATCTGAGAAAGGTGGATCTCGAGACGTATGAGAGTTATGAACAGCTGCTCATGGGTTTCGAGACCATGTTTTGTTGCTTGACAATTCGCAATCATTTGAATGAGAGGAAGGTGACAGACCTTGGGAATGGGGCTGAGTACGTACCCACCTATGAAGACAAAGATGGTGACTGGATGCTTGTTGGGGATGTACCCTGGAAGATGTTTGTTGAATCGTGCAAAAGAATCAGGTTGATGATCAAGTCAGAGGCCACTGGTTTAGAAATTCAGAGGACAGATTCGAAGTGCAGGAGCTCTAGTTAG 588 0.5153 MSPESTVTTSHSSAQSDVVELNLKETELTLGLPGTTNVTGSKRRFSQTNGFGSFSSSTNSPPPKAQTVGWPPVRASRRNVMRNCKYVKVAVDGAPYLRKVDLETYESYEQLLMGFETMFCCLTIRNHLNERKVTDLGNGAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMIKSEATGLEIQRTDSKCRSSS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1719 195 MobiDBLite consensus disorder prediction 49 64 - -
Dere11g1719 195 Gene3D - 79 188 - -
Dere11g1719 195 MobiDBLite consensus disorder prediction 49 70 - -
Dere11g1719 195 ProSiteProfiles PB1 domain profile. 84 178 IPR000270 GO:0005515
Dere11g1719 195 FunFam Auxin-responsive protein 79 186 - -
Dere11g1719 195 SUPERFAMILY CAD & PB1 domains 76 175 - -
Dere11g1719 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 21 180 IPR003311 GO:0005634|GO:0006355
Dere11g1719 195 Pfam AUX/IAA family 82 182 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1719 Dere-ChrDere11 30914522 30915543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1719 30 178 B3 DNA Binding Superfamily AT5G62000 24.277 1.33e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere11g1719 AUX_IAA 1.3e-45 CL0072