Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1718 ATGGCTCTCGGACTTGAAATCACAGAGCTAAGGTTGGGTCTTCCCGGAGGGGATCATCAACCTAGTGTGGTGGTGGTGGACAAGAGTGAGACCAAGAAGAGGGTGTTCTCGGAGATCGACGGTGGCGGTGACAACGATGAAAGTAGCTGCTCCGGTGACCGCAAGACGCCGGCGAAGAATCAGGTTGTGGGGTGGCCTCCGGTGTGCTCGTACAGAAGGAGAAATAGCATGAGTGAAGCTTCAAAAATTTACGTGAAGGTTAGCATGGATGGGGCTCCTTTCTTGCGTAAAGTTGATTTGGGTATGCAAAAGGGATACTCCGAGTTAGCATCGGCCTTGGAGAAGCTCTTTGATTGCCATGGAATCGGAGAGGCATTGATGGGTGTGGACAGCTCTGAACACGTTCCCATTTATGAGGACGGGGATGGGGACTGGATGCTTGTTGGTGATGTACCTTGGGAAATGTTCATTGAGTCATGCAAGAGGCTGAGGATTATGAAGAGATCGGAGGCAAAGGGCTTTGATCTGCAACCAAAAGGGTCTTCCAAGAAGGGCTTTATAGCAGGCAAATCCAAGTGA 579 0.506 MALGLEITELRLGLPGGDHQPSVVVVDKSETKKRVFSEIDGGGDNDESSCSGDRKTPAKNQVVGWPPVCSYRRRNSMSEASKIYVKVSMDGAPFLRKVDLGMQKGYSELASALEKLFDCHGIGEALMGVDSSEHVPIYEDGDGDWMLVGDVPWEMFIESCKRLRIMKRSEAKGFDLQPKGSSKKGFIAGKSK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1718 192 Gene3D - 76 179 - -
Dere11g1718 192 SUPERFAMILY CAD & PB1 domains 75 167 - -
Dere11g1718 192 MobiDBLite consensus disorder prediction 36 58 - -
Dere11g1718 192 MobiDBLite consensus disorder prediction 36 53 - -
Dere11g1718 192 FunFam Auxin-responsive protein 77 178 - -
Dere11g1718 192 Pfam AUX/IAA family 49 174 IPR033389 -
Dere11g1718 192 ProSiteProfiles PB1 domain profile. 82 170 IPR000270 GO:0005515
Dere11g1718 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 172 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1718 Dere-ChrDere11 30905307 30907973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1718 74 172 B3 DNA Binding Superfamily AT4G23980 40.404 3.62e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere11g1718 AUX_IAA 1.2e-45 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1718 11 30905307 30907973 Dere12g1614 12 28626759 28629939 CCT