Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1716 ATGGATGTTACCTCTCTGGGACCAAATAGCAACGCCCAAACCGACCGATATCCTTTGCTGATGGAGCAGCCAGAAACCCATAATGGCCATCAGCACATAATTGACATTACAAGAAACAATAATGACTTATCCAGCTCATCTCAAGATGATCAACGTCCTGAAACACCTTTGCCACATAATGAAGGTCAACTGTCAGCTGGCACACAAGTCCTCACTCATCAAACATCTTCATCTTCCTCACCCCGATTAAACTCTAGGAATTCCACATCTTCAAGAAGAGGTGAGGGTTATGGTCATCGCAGAAGAAGCCCACTGAATTCAGGACTCTGGATTTCTGTTGAGCTTGTTTTCACTGTGAGTCAGATCATAGCATCTATTGTTGTCTTGTCATTATCCAGGAATGAAAATCCCCAAGCCCCATTATTTGCTTGGATCGTGGGTTATGCATCTGGTTGTGTTGCTACACTTCCTATTCTTTACTGCCGTTATCGAAACCGTAATCAAAGCACTGGACAAGATTTATCTCAACCATCTCAAGGATCTTCTGGAAGCCATCCTTCAGAAAGGGCTTCCTATACTGCCATCTCAGTTGCTCATGTTTCAGACGAAGACAATAGTCATGCTACAGAATCAGCTACAAGAAGCACTGGGATTCCTGGAGCCTTTAGTACTAGGTTTAATGGATTAGTAGACCATTTCAAGATGGCCTTAGATTGCTTCTTTGCAGTTTGGTTTGTTGTGGGCAACGTTTGGATCTTTGGAGGTCACTCTTCTCCTTCTGATGCTCCAAAATTATATAGGTTATGTATAGTGTTTCTTACCTTCAGCTGCATTGGATATGCTATGCCATTTATACTATGTGCAACAATTTGTTGCTGCTTACCTTGCATAATTTCTGTTTTGGGAATTCGGGAGGATTTTTTTCAAACTAGAGGAGCAACAGTTGAATCTATTAATGCTTTGCCTATATATAAGTTCAGATTGAAGAAAAACGAAAATAGTGATGATAAGGATGACAATACAACTATAGATGAAGGCGGGACCTTGGCTGCTGGGACAGAAAAGGAACGAGCCATATCAGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCAAAATATGTAGATGATGATGAGCTTAGGGAGCTACCCTGCTTCCATGTCTTCCATGTTGAGTGTGTGGACAAATGGTTAAAGATAAACGCATCTTGTCCTCTTTGTAAAAGCGAGGTTGGTATGAGTGGAGTGCCACCTTCAGCAGAGGAGTCCAGTCAGCATTAG 1278 0.421 MDVTSLGPNSNAQTDRYPLLMEQPETHNGHQHIIDITRNNNDLSSSSQDDQRPETPLPHNEGQLSAGTQVLTHQTSSSSSPRLNSRNSTSSRRGEGYGHRRRSPLNSGLWISVELVFTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYCRYRNRNQSTGQDLSQPSQGSSGSHPSERASYTAISVAHVSDEDNSHATESATRSTGIPGAFSTRFNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFFQTRGATVESINALPIYKFRLKKNENSDDKDDNTTIDEGGTLAAGTEKERAISGEDAVCCICLAKYVDDDELRELPCFHVFHVECVDKWLKINASCPLCKSEVGMSGVPPSAEESSQH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1716 425 MobiDBLite consensus disorder prediction 61 92 - -
Dere11g1716 425 MobiDBLite consensus disorder prediction 168 188 - -
Dere11g1716 425 SUPERFAMILY RING/U-box 359 412 - -
Dere11g1716 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 410 - -
Dere11g1716 425 ProSiteProfiles Zinc finger RING-type profile. 366 407 IPR001841 -
Dere11g1716 425 FunFam E3 ubiquitin-protein ligase 349 415 - -
Dere11g1716 425 SMART ring_2 366 406 IPR001841 -
Dere11g1716 425 Pfam Ring finger domain 366 407 IPR001841 -
Dere11g1716 425 MobiDBLite consensus disorder prediction 40 103 - -
Dere11g1716 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 413 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1716 Dere-ChrDere11 30891689 30894354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1716 1 413 C3H Transcription Factor Family AT1G80400 58.753 1.14e-170 482