Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1655 ATGCCAATGGGCGTGGACATGTCGAATAACCCACCTCCCACTTCTCACACTAAAGACTTCTTCGCTTCTCCTGCTCTCTCCCTCAGCCTCGCTGGGATTTTCCGGCATGCCGGGGAGGCTGCTGCGGCGGCGGGGACCGCCGTGTCCAGTAAGGAGGTGGAGGAGGGCGATGAAGGCAGCGGCGGAGGAGGCGGAGGCGGCGGCCGGCGAGAGGACACCGTCGAGATTAGCAGCGAGAATTCCGGCCACACGAGATCCAGATCGGATGATATTGATTTTGAAGGAGAAGGTGAGCAAGATGACGATGATGGTGATGGAGACAAGAACAAGAAGAAGAAGAGGAAGAAATATCACAGACACACTGCTGAGCAAATCAGAGAAATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAAAGGCAACAACTTAGCAAGCAATTAGGCCTTGCTCCTCGACAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGTCATGAGAATTCATTGTTGAAGACAGAGATTGAGAAACTAAGAGAAGAAAATAAGGCGATGAGAGACACTATTAACAAATCGTGCTGTCCCAACTGTGGCATGGCCACCACTACCAGAGACGCCACCATGTCCACCGAAGAACAACAACTTCGTATCGAAAATGCCAAACTCAAAGCCGAGGTGGAGAAGCTGCGAGCGACGATAGGGAAGTACCCACAGGGAGCCACGTCACCGTCGTGCTCTGCAGGAAACGAGCAAGAGAACAGAAGCTCGTTGGACTTCTACACTGGCATTTTCGGGCTCGAGAAGTCCAGGATCATGGAGATAGTGAATCAGGCAGTGGACGAACTCGTAAAGATGGCCACCGTAGGGGTACCACTGTGGGTTCGCAGTGTTGAGACTGGCCGTGAGATTCTTAACTACGACGAGTACGTGAAGGAGTTCTCCGCTGAGAGTTCCAGCAGTGCAAGACCCAGGAGGTCCATCGAAGCTTCCAGAGACACTGGCGTCGTGTTCGTGGACCTCCCGCGACTCGTCCAAAGATTCTTTGATGTGAATCAATGGAAGGAAATGTTTCCATGCTTGATATCGAAGGCTGCATCTGTAGATGTTATATGCAGCGGAGAGGGAGCTAATAAGAATGGTGCAGTGCAGCTGATGTTCGCTGAGCTGCAAATGCTGACGCCAATGGTGGCCACAAGAGAAGTGTATTTTGTGAGGTACTGCAAGCAACTGAACGCAGAGCAGTGGGCAATCGTGGACGTTTCCGTGGATAAAGTAGAAGACAACATCGATGCATCTCTCGTGAAGTGCAGAAAACGACCATCAGGCTGCATTATTGAGGATAAGTCAAATGGCCATTGCAAGGTAATCTGGGTGGAGCACTTAGAGTGCCAGAAGAGCACAGTCCACTCAATGTACCGCACCATTGTGAACAGTGGCCAAGCTTTCGGGGCAAGGCACTGGATCGCCACTCTGCAACTTCAATGTGAACGTCTAGTTTTCTTCATGGCCACCAATGTTCCAATGAAGGATTCAACTGGTGTTGCAACATTGGCAGGGAGGAAAAGCATATTGAAGTTGGCACAGAGAATGACGTGGAATTTCTGCCACGCCGTGGGAGCTTCGAGCTTCCATACATGGACTAAGGTTACGAGCAAAACAGGGGAAGATATAAGGATTAGTTCAAGGAAGAACTTGAACGATCCTGGGGAACCTCTTGGGGTGATCTTGTGTGCAGTGTCTTCTGTGTGGTTGCCTGTGTCTCCTAATGTTCTGTTTGATTTCTTGAGGGATGAAGCCCGCAGAAGTGAGTGGGATATCATGTCCAGTGGTGGGTCAGTGCAATGCATAGCAAACTTAGCCAAAGGACAAGACCGAGGCAATTCAGTAACCATCCAAACGATTAAATCAAAAGAGAACAGCATGTGGGTACTGCAAGATAGCTGCACAAATGCGTACGAATCCATGGTGGTGTATGCACCTGTAGACATCACTGGGATTCAGTCTGTGATGACAGGATGTGACTCTAGCAATCTAGCCATACTTCCCTCAGGCTTTTCAATTCTCCCTGATGGGTTGGAGGCAAGGACATTGGTCATAACTTCAAGGCAGGAAGAGAGAAATACAGAAGGAGGGTCTTTATTCACAATGGCATACCAGGTCCTTACAAATACTTCTCCTACTGCTAAGTTAACAATGGAGTCTCTGGAATCTGTCAACACTCTTATATCTTGTACATTAAGAAATATCAGAACCAGTTTACAATGTGAGGACGGTTGA 2304 0.4896 MPMGVDMSNNPPPTSHTKDFFASPALSLSLAGIFRHAGEAAAAAGTAVSSKEVEEGDEGSGGGGGGGGRREDTVEISSENSGHTRSRSDDIDFEGEGEQDDDDGDGDKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIEKLREENKAMRDTINKSCCPNCGMATTTRDATMSTEEQQLRIENAKLKAEVEKLRATIGKYPQGATSPSCSAGNEQENRSSLDFYTGIFGLEKSRIMEIVNQAVDELVKMATVGVPLWVRSVETGREILNYDEYVKEFSAESSSSARPRRSIEASRDTGVVFVDLPRLVQRFFDVNQWKEMFPCLISKAASVDVICSGEGANKNGAVQLMFAELQMLTPMVATREVYFVRYCKQLNAEQWAIVDVSVDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTVHSMYRTIVNSGQAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWNFCHAVGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDEARRSEWDIMSSGGSVQCIANLAKGQDRGNSVTIQTIKSKENSMWVLQDSCTNAYESMVVYAPVDITGIQSVMTGCDSSNLAILPSGFSILPDGLEARTLVITSRQEERNTEGGSLFTMAYQVLTNTSPTAKLTMESLESVNTLISCTLRNIRTSLQCEDG 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1655 767 SMART START_1 282 506 IPR002913 GO:0008289
Dere11g1655 767 Pfam Homeodomain 114 169 IPR001356 GO:0003677
Dere11g1655 767 Gene3D - 319 501 IPR023393 -
Dere11g1655 767 MobiDBLite consensus disorder prediction 1 20 - -
Dere11g1655 767 SUPERFAMILY Homeodomain-like 104 172 IPR009057 -
Dere11g1655 767 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677
Dere11g1655 767 SUPERFAMILY Bet v1-like 275 506 - -
Dere11g1655 767 Coils Coil 170 197 - -
Dere11g1655 767 MobiDBLite consensus disorder prediction 38 123 - -
Dere11g1655 767 Gene3D - 100 183 - -
Dere11g1655 767 MobiDBLite consensus disorder prediction 72 92 - -
Dere11g1655 767 FunFam Homeobox-leucine zipper protein GLABRA 2 282 505 - -
Dere11g1655 767 Pfam START domain 283 506 IPR002913 GO:0008289
Dere11g1655 767 SMART HOX_1 113 175 IPR001356 GO:0003677
Dere11g1655 767 ProSiteProfiles START domain profile. 273 509 IPR002913 GO:0008289
Dere11g1655 767 CDD homeodomain 118 169 IPR001356 GO:0003677
Dere11g1655 767 CDD START_ArGLABRA2_like 277 505 - -
Dere11g1655 767 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981|GO:0006355
Dere11g1655 767 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 110 762 IPR042160 -
Dere11g1655 767 FunFam Homeobox-leucine zipper protein HDG1 98 187 - -
Dere11g1655 767 SUPERFAMILY Bet v1-like 535 749 - -
Dere11g1655 767 Coils Coil 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1655 Dere-ChrDere11 30260069 30268497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1655 76 766 Homeobox Transcription Factor Family AT1G79840 65.954 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere11g1655 START 8.4e-56 CL0209