Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1641 ATGTCTAAACCATTAGAACATGATTACATAGGCCTAGCATCAGAGAATCCGTCAATGGAAAAGAACTCTGAGAAAATATCCTCCTCTTCTTCTTCTTCTGCTTCTTCTGCTCTCTCTAGTGAGAAGGAAAATTGCTCTTCTCTTAATTTCAAGGAGACAGAGCTCAGACTCGGGCTTCCTGGTAGCGATTCTCCTCCTCCTGAGAGAAAACTTGGTAGTGGGCTTTCTCTTTTCGGCAAGGATTTGCAGAATAAGCATAATAATAATGATAGCAATAATAATAATGGGTTGTGTTCTTCTTCCCCTTTGAAGAACATCGTGGCTGGGGCTAAGAGGGGTTTTTCTGACGCCATTGATGGGATTGGGTCCTCTGGCAAATGGGGTTTCTCTGTGAGTGATAAAATTGCATCTGAAGCTGATTTGGCAAAAGGGTCTTGTTTGTTCTCTCCCAGGGGTGGGAATGGTTTGAAGCCTCCTCTCGCTGCTTTAGAAGCTTCTACTACTTCTGAACAAAAAAGCATCAAAGAGGTTGGAATAGTTCAAGAGAAGAAGAAGCCTCAGGTTGCTGTTGCTGCTACAAATGAACATGGCAGTGTTCCTCCTGCTGCTAAGGCACAAGTTGTGGGATGGCCACCAATTCGATCTTACCGAAAGAACAGCATGGCCTCTAATTCGACAAAGAACAATGATGAAGGTGAGGGTAAAGTGGGATATGGCTGTCTCTATGTGAAGGTCAGCATGGATGGTGCTCCTTATCTCAGAAAGGTTGATCTGAAGACCTACAGCAACTATGTGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAGTTCTCGAGGACTTCCCGGTAAAGACGGCCTAAGTGAGAGCTCGTTGAGGGATCTTCTTCATGGCTCTGAATATGTTCTTACTTATGAAGATAAGGATGGTGATTGGATGCTCGTTGGTGATGTTCCCTGGGAGATGTTCACTGACTCATGTAGGAGATTAAGGATCATGAAAGGTTCTGAAGCAATTGGGCTTGCTCCAAGGGTCATGGAAAAATCCAGTAGCCAAAACTAA 1083 0.4414 MSKPLEHDYIGLASENPSMEKNSEKISSSSSSSASSALSSEKENCSSLNFKETELRLGLPGSDSPPPERKLGSGLSLFGKDLQNKHNNNDSNNNNGLCSSSPLKNIVAGAKRGFSDAIDGIGSSGKWGFSVSDKIASEADLAKGSCLFSPRGGNGLKPPLAALEASTTSEQKSIKEVGIVQEKKKPQVAVAATNEHGSVPPAAKAQVVGWPPIRSYRKNSMASNSTKNNDEGEGKVGYGCLYVKVSMDGAPYLRKVDLKTYSNYVELSSALEKMFSCFTIGQCSSRGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRVMEKSSSQN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1641 360 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 47 347 IPR003311 GO:0005634|GO:0006355
Dere11g1641 360 Pfam AUX/IAA family 52 351 IPR033389 -
Dere11g1641 360 Gene3D - 236 354 - -
Dere11g1641 360 MobiDBLite consensus disorder prediction 16 46 - -
Dere11g1641 360 FunFam Auxin-responsive protein 235 352 - -
Dere11g1641 360 ProSiteProfiles PB1 domain profile. 240 342 IPR000270 GO:0005515
Dere11g1641 360 MobiDBLite consensus disorder prediction 80 99 - -
Dere11g1641 360 MobiDBLite consensus disorder prediction 1 99 - -
Dere11g1641 360 SUPERFAMILY CAD & PB1 domains 240 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1641 Dere-ChrDere11 30062733 30065583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1641 244 350 B3 DNA Binding Superfamily AT4G23980 30.841 3.02e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere11g1641 AUX_IAA 2.1e-91 CL0072