Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1638 ATGTGTGGGATTTCTTCAATGAAATCTTTTTTTCCTCAACTTTTACCAATTAAAGTTGTTTTATGCTGTGTGAAAATTCTCTGCAATTCCTACCGGCCAAGGCAGATAGAAAGGAATAGAGGAAGGATTAAAGGAAGCCTTAATGTCATACTTGGCAAGTTCTACTATATATATCTTACCAGAGGAGCCTTTTGTGCCATATTTCTCGACTCTGAGTATCTCCCTGTTATCTCATCTTCTCTAGCTCCATCTTTAAGGTTTCCCCTTAAAATGGCAGGCCTAGCTTTCGGCCGCTTCGACGATTCTTTCAGTCTGGGCTCCATTAAAGCTTATCTTGCTGAGTTCATCTCAACCCTCCTCTTCGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGCGAAGTTGACTTCAGGGGCAGCTCTTGATCCAGCAGGGTTGGTAGCAGTTGCAGTATGCCATGGATTTGCTCTGTTTGTAGCAGTGTCCATTGGGGCCAACATATCTGGTGGGCATGTGAACCCAGCAGTGACCTTTGGATTGGCTCTTGGTGGCCAGATCACAATCCTCACTGGTATCTTCTACTGGATTGCACAGCTTGTTGGCTCCATTGTTGCATGCTTCCTCCTCAAGTTTGTCACTGGAGGCTTGGCAACTCCCACACACACTCTGGCTGCCGGAGTTGGAGCAATTGAAGGAGTGATTATGGAGATCATCATCACATTTGCTTTAGTCTACACTGTGTATGCCACAGCAGCTGACCCCAAGAAGGGCTCACTGGGCACCATTGCACCCATTGCCATTGGCTTCATTGTTGGTGCCAACATCTTGGCTGCCGGCCCATTCTCCGGTGGCTCCATGAACCCGGCTCGGTCGTTTGGCCCTGCGGTTGCCAGCGGTGACTTCCAAGACAACTGGATCTACTGGGTTGGACCTCTCATTGGTGGAGGCTTGGCTGGCCTTGTCTACGGCAATGTGTTCATGCCCTCTGAGCATACACCTTTATCTAATGAGTTTTAA 1017 0.4798 MCGISSMKSFFPQLLPIKVVLCCVKILCNSYRPRQIERNRGRIKGSLNVILGKFYYIYLTRGAFCAIFLDSEYLPVISSSLAPSLRFPLKMAGLAFGRFDDSFSLGSIKAYLAEFISTLLFVFAGVGSAIAYAKLTSGAALDPAGLVAVAVCHGFALFVAVSIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLVGSIVACFLLKFVTGGLATPTHTLAAGVGAIEGVIMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGDFQDNWIYWVGPLIGGGLAGLVYGNVFMPSEHTPLSNEF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1638 338 PANTHER AQUAPORIN-8 95 331 IPR034294 -
Dere11g1638 338 Gene3D Glycerol uptake facilitator protein. 92 336 IPR023271 -
Dere11g1638 338 NCBIfam MIP family channel protein 113 322 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere11g1638 338 Pfam Major intrinsic protein 105 322 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere11g1638 338 FunFam Probable aquaporin TIP1-1 92 338 - -
Dere11g1638 338 PRINTS Major intrinsic protein family signature 153 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere11g1638 338 PRINTS Major intrinsic protein family signature 305 325 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere11g1638 338 PRINTS Major intrinsic protein family signature 268 290 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere11g1638 338 PRINTS Major intrinsic protein family signature 190 209 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere11g1638 338 PRINTS Major intrinsic protein family signature 109 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere11g1638 338 PRINTS Major intrinsic protein family signature 235 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere11g1638 338 CDD MIP 109 325 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere11g1638 338 ProSitePatterns MIP family signature. 171 179 IPR022357 -
Dere11g1638 338 SUPERFAMILY Aquaporin-like 103 334 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1638 Dere-ChrDere11 30036690 30041374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1638 91 336 Major Intrinsic Protein MIP AT3G16240 85.020 2.97e-149 418