Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1633 ATGACAGATCAAAGCTGCTCTGAGACCACCAGCACCAGCAATTCCTTCGTCTCCTCTTCTTCTTCGTCATCTTCTTCAGCACCTTCCCGATCTTCTTCCACTGAATTATCAAAACCCACTTCCAATGTCGAAACCGAGAAATCTCAGTCTCAGACCAAAGAACAGAGCACAAGCAGAGCTAAGAGACCCAGAGACTCTTCCAACAAGCACCCATCCTACCATGGAGTCCGAATGCGGAATTGGGGCAAATGGGTGTCGGAAATTCGTGAGCCTCGCAAGAAATCACGAATCTGGCTCGGCACTTTCGCTACTCCGGAAATGGCGGCTCGAGCCCACGACGTCGCGGCTTTGAGCATAAAGGGTGAATCCGCCATTCTGAACTTTCCTCAAATAGCTAGTCTGCTTCCCAGACCCGTCACTCTAACCCCGCCTGACATCCAAGCCGCCGCCGCAGAAGCAGCCGCCATGGTCAAATTCGACCCGGTACAGTCATCGTCAACGCCTTCGTCTTCATCGTCGCCTGAAGAATCGGAGTCTTCGGAGCTTAGCGAGATAGTGGAATTGCCCAACATTGAAGAAGAGAGCTTGGAGCCGGTGGATTCGTCGCGGACTGAGTTCGTGTGGATGGAGTCGATGGATTGTTGGCTGTATGATCCTCCTCCATTAATGGGGTTAGAGGAAGTGGGCTTCTTCGAGCAGTTTCTGGGAGAAGAGAGTTTTGAGATTCCAATTTGGGATTGA 741 0.5155 MTDQSCSETTSTSNSFVSSSSSSSSSAPSRSSSTELSKPTSNVETEKSQSQTKEQSTSRAKRPRDSSNKHPSYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGESAILNFPQIASLLPRPVTLTPPDIQAAAAEAAAMVKFDPVQSSSTPSSSSSPEESESSELSEIVELPNIEEESLEPVDSSRTEFVWMESMDCWLYDPPPLMGLEEVGFFEQFLGEESFEIPIWD 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1633 246 ProSiteProfiles AP2/ERF domain profile. 72 129 IPR001471 GO:0003700|GO:0006355
Dere11g1633 246 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 51 197 - -
Dere11g1633 246 SUPERFAMILY DNA-binding domain 72 129 IPR016177 GO:0003677
Dere11g1633 246 FunFam Ethylene-responsive transcription factor 2 71 130 - -
Dere11g1633 246 SMART rav1_2 72 135 IPR001471 GO:0003700|GO:0006355
Dere11g1633 246 MobiDBLite consensus disorder prediction 1 56 - -
Dere11g1633 246 MobiDBLite consensus disorder prediction 57 72 - -
Dere11g1633 246 MobiDBLite consensus disorder prediction 160 179 - -
Dere11g1633 246 Gene3D AP2/ERF domain 72 131 IPR036955 GO:0003700|GO:0006355
Dere11g1633 246 Pfam AP2 domain 71 121 IPR001471 GO:0003700|GO:0006355
Dere11g1633 246 MobiDBLite consensus disorder prediction 1 75 - -
Dere11g1633 246 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Dere11g1633 246 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Dere11g1633 246 CDD AP2 71 129 IPR001471 GO:0003700|GO:0006355
Dere11g1633 246 MobiDBLite consensus disorder prediction 160 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1633 Dere-ChrDere11 29987667 29988407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1633 34 220 AP2-EREBP Transcription Factor Family AT5G11590 55.122 1.97e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere11g1633 AP2 2.1e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1633 11 29987667 29988407 Dere11g1633 11 29987667 29988407 ECH