Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1624 ATGGAAGTGCCGAAATACTTTGTCGGTGGCTACTTCGGCTCCGGAGGGGACCACTTTTCGCCGGAAGAGCGCCATGCCGACCAGAAACCAGGCGAACCATTCGCCATTGACGACCTCCTCGACTTCTCCAACGCCGACGTTATTATGTCCGATGGCTTTTTTGATAATGTCGCAGGAAATTCCACCGACTCCTCCACTGGCACCGCTGTTGGTAGCTGCAACTCTTCAATTTCCTGTGTCGACAACCGTTTCCCCGGCAACTTCGGTACCCGTCCCTTCGGTGATCCTCAATTCTCCGGGGAGTTCTGCGTGCCGTATGACGACATGGCGGAACTGGAATGGCTATCGAACTTCGTGGAAGACTCATTCGCAGCACAAGACGAGCTAAAAACACTCCATCTTCTCTCCGGCGCTACCTCCGCTTCCGCATTTGGCGCGAAACCTCAGACTCCAGAATCTTCCTCCTCCTCAGAAACTCTCCCACCTTTCGCTCCCGATGCTCCTAGAAACGCACCGTTTTTCCATCCAGAAACTCCGCTCCCGGGCAAAGCACGGAGCAAGCGTTCACGCGCCGCTCCTGGCGATTGGTCCACGCGCCTCCTTCACCTCATAACGCCAACGCCAAACACCGCGACGACGACAGAATCGAAACCAGTGCAAGCTAAGGCCACTGCGACAAAGAAGAGTGAGAGTTCGGACTCCTCCGGCAGGAAATGCCTACACTGCGCCGCTGAGAAGACGCCTCAATGGCGAACCGGGCCAATGGGTCCGAAGACGCTGTGCAATGCCTGCGGCGTCCGGTACAAGTCGGGGAGGCTGGTGTCAGAGTACCGGCCGGCGGCGAGCCCAACGTTTGTGTCGACGAAGCACTCGAATTCTCATAGGAAGGTTTTGGAGCTGAGGAGGCAGAAGGAGCTCCAAAGGCAACAGCAGCAGCATCAACATTTGATGAGTCAAAGTTCAATTTTCGGCGTATCTAACGGTGGGGATGAGTTCTTGATCCAGCACCCTGGTGGGCCAGACTATAGGCATATCATCTAG 1041 0.5581 MEVPKYFVGGYFGSGGDHFSPEERHADQKPGEPFAIDDLLDFSNADVIMSDGFFDNVAGNSTDSSTGTAVGSCNSSISCVDNRFPGNFGTRPFGDPQFSGEFCVPYDDMAELEWLSNFVEDSFAAQDELKTLHLLSGATSASAFGAKPQTPESSSSSETLPPFAPDAPRNAPFFHPETPLPGKARSKRSRAAPGDWSTRLLHLITPTPNTATTTESKPVQAKATATKKSESSDSSGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVSEYRPAASPTFVSTKHSNSHRKVLELRRQKELQRQQQQHQHLMSQSSIFGVSNGGDEFLIQHPGGPDYRHII 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1624 346 Gene3D - 233 283 IPR013088 GO:0006355|GO:0008270
Dere11g1624 346 MobiDBLite consensus disorder prediction 143 236 - -
Dere11g1624 346 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Dere11g1624 346 PIRSF Txn_fac_GATA_plant 18 328 IPR016679 GO:0003677|GO:0005634|GO:0045893
Dere11g1624 346 SMART GATA_3 233 287 IPR000679 GO:0006355|GO:0043565
Dere11g1624 346 PANTHER GATA TRANSCRIPTION FACTOR 23 314 - -
Dere11g1624 346 FunFam GATA transcription factor 228 315 - -
Dere11g1624 346 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Dere11g1624 346 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 296 - -
Dere11g1624 346 MobiDBLite consensus disorder prediction 143 161 - -
Dere11g1624 346 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Dere11g1624 346 MobiDBLite consensus disorder prediction 202 230 - -
Dere11g1624 346 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1624 Dere-ChrDere11 29908396 29909657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1624 32 346 C2C2-Gata Transcription Factor Family AT4G32890 43.769 6.93e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere11g1624 GATA 2.1e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1624 11 29908396 29909657 Dere11g1624 11 29908396 29909657 ECH