Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1611 ATGCCGGTACTGCGTAGTGGAGTGCGCAGGGGCCGGGCAGCAGCAAAGAAACAGCAACAGCAGCAGCAACCTAACCCATTGATCGAAGAAGGGGAGGCAATTGCAACGAGGACAAGGAGGAGGCGGGCGGCGGCGGCGGCAGCAGCGGTGCCGAAGACTAATAAACAACAGAAGCAGGTGTTGGTCGATGAGAACGTAGCTGTGCCGGCAAAGGAGGAAGCGAAAAAGGGATTGGACGAAGCTGTTCGCGTTGGTGAAGCTGCTGCTGGTGGAGCGGATAGAGAAGAGGTAGGGGAGAAGCAGATGGATGATTACGATAGTGGAGCTCGGAGCAATGACAAGGGTAATGCCGGTGAAGATGAGGGGAGCACCGCTCCACTTCCTGAGAAGGTTCAAGTAGGTGGGTCCCCTATGTATAAAATAGAAAGAAAGTTGGGCAAGGGTGGATTTGGGCAAGTATATGTTGGTCGACGTGTTTCTGGTGTAAATATGAATGAGAGGACTGGGCCTGGAGCTGTGGAGGTTGCATTAAAATTTGAGCATAGAAGTAGTAAAGGATGTAACTATGGACCACCATATGAGTGGCAAGTGTACAACACTCTTGGTGGCAGTCATGGTGTGCCACGAGTACACTACAAGGGCAGGCAAGGTGACTACTACGTCATGGTTATGGATATGTTGGGACCTAGCTTGTGGGATGTTTGGAATAATAACTCTCACACAATGTCCACCGAAATGGTTGCTTGTATTGCCATTGAAGCTATATCCATATTGGAAAAAATGCACTCTCGAGGGTATGTGCATGGCGATGTGAAGCCTGAAAATTTTCTGCTTGGTCCTCCTGGGACACCTGATGAAAAAAAACTGTTCCTTGTTGATCTTGGATTAGCTACTAGATGGAGGGATAATACAACAGGTTTGCATGTGGAATACGATCAACGCCCTGATGTTTTCAGGGGCACAGTACGCTATGCTAGTGTGCATGCACACTTGGGTAGAACTGGCAGCAGGAGGGATGATCTGGAATCACTTGCTTATACACTGATTTTCCTCCTTCGAGGTCGTCTCCCTTGGCAGGGTTATCAGGGAGAAAACAAAGGGTTTCTTGTTTGCAAGAAGAAGATGGGAACATCTCCAGAGAGCCTATGTTGCTTCTGCCCCCTGCCTTTTAGACAGTTTGTTGAACATGTGGTGAACTTGAAGTTTGATGAAGATCCTAACTATGCAAAATATATTTCTCTATTTGATGGCATTGTTGGTCCAAATCCAGATATTAGGCCTATTAATACAGAAGGTGCACAAAAGCTCATTGGTCATAAGAGGGGTCGGTTGGCCATGGAAGAAGAAGATGATGAACAGCCAAAAAAGAAGATCCGTATGGGTATGCCGGCAACACAGTGGATAAGTGTTTACAATGCTCGCAGACCAATGAAACAAAGGTATCACTACAATGTGGCAGATACAAGGCTATCCCAGCACATTGAGAAAGGAAATGAGGATGGCTTATATATTAGTAGTGTGGCTTCATGTCAGAACCTGTGGGCCTTAATCATGGATGCAGGCACTGGTTTCACTGCCCAAGTTTATGAACTCTCCCCCTATTTTCTCCACAAGGAGTGGATAATGGAGCAGTGGGAAAAAAATTACTATATCAGTGCAATAGCCGGCGCTACAAACGGGAGTTCCTTAGTAGTGATGTCCAAGGGCACACAGTATGTGCAGCAATCCTACAAAGTTAGTGATTCATTTCCATTTAAGTGGATTAACAAAAAATGGAGGGAGGGCTTTTATGTTACGGCTATGGCCACTGCAGGTAGCAGATGGGGAGTAGTTATGTCTCGTGGTGCAGGATTTTCTGACCAGGTAGTTGAACTAGATTTTCTTTATCCTAGTGAAGGGATTCACAAGCGGTGGGATTATGGATACCGAATCACAGCAACTGCTGCAACTTGGGATCAAGCAGCATTTGTCCTCAGTGTGCCTAGGAGGAAACCTGTGGATGAGACGCAGGAAACACTCAGAACTTCATCTTTTCCTAGTGTACATGTCAAGGAGAAGTGGGCAAAGAACCTCTACATTGCATCTATTTGCTATGGACGAACAGTTTCTTGA 2112 0.4654 MPVLRSGVRRGRAAAKKQQQQQQPNPLIEEGEAIATRTRRRRAAAAAAAVPKTNKQQKQVLVDENVAVPAKEEAKKGLDEAVRVGEAAAGGADREEVGEKQMDDYDSGARSNDKGNAGEDEGSTAPLPEKVQVGGSPMYKIERKLGKGGFGQVYVGRRVSGVNMNERTGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNTLGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDNTTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMGTSPESLCCFCPLPFRQFVEHVVNLKFDEDPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLAMEEEDDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADTRLSQHIEKGNEDGLYISSVASCQNLWALIMDAGTGFTAQVYELSPYFLHKEWIMEQWEKNYYISAIAGATNGSSLVVMSKGTQYVQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWGVVMSRGAGFSDQVVELDFLYPSEGIHKRWDYGYRITATAATWDQAAFVLSVPRRKPVDETQETLRTSSFPSVHVKEKWAKNLYIASICYGRTVS 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1611 703 FunFam casein kinase 1-like protein HD16 112 459 - -
Dere11g1611 703 ProSitePatterns Protein kinases ATP-binding region signature. 145 178 IPR017441 GO:0005524
Dere11g1611 703 CDD STKc_CK1 138 415 - -
Dere11g1611 703 MobiDBLite consensus disorder prediction 89 117 - -
Dere11g1611 703 MobiDBLite consensus disorder prediction 86 132 - -
Dere11g1611 703 SMART serkin_6 139 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1611 703 SUPERFAMILY Protein kinase-like (PK-like) 139 419 IPR011009 -
Dere11g1611 703 MobiDBLite consensus disorder prediction 1 58 - -
Dere11g1611 703 Gene3D Transferase(Phosphotransferase) domain 1 105 462 - -
Dere11g1611 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Dere11g1611 703 Pfam Protein kinase domain 139 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1611 703 PANTHER CASEIN KINASE-RELATED 133 665 - -
Dere11g1611 703 ProSiteProfiles Protein kinase domain profile. 139 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1611 Dere-ChrDere11 29714187 29720156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1611 234 415 MAP Kinase Kinase Kinase AT5G50180 26.316 5.15e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Dere11g1611 Pkinase 7.8e-16 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1611 11 29714187 29720156 Dere11g1611 11 29714187 29720156 ECH