Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1605 ATGACTCGGCGGTGTTCTCACTGCAGCAACAATGGGCACAACTCCCGAACATGCCCGTCTCGTGGGGGTGGTGGTGTGAGGCTTTTCGGCGTGAGACTCACCGATGGATCGATCATCAAGAAGAGCGCGAGCATGGGAAGCCTCTCCGCTCATTACCTTCCTTCTTCGCCCAATGCTGCATCGCCAAATCCCGGTTCGCCCAGCTTCGACCCGGGTCGTGAACCTCAGGGGTACTTGTCCGATGACCCTGCTCATGCCTCCAGTTCCGCACACCGTCGCGGTGAAAGAAAGAAAGGTGTTCCATGGACTGAAGAAGAACACCGGCTATTCCTAATTGGTCTCCAAAAATTGGGTAAAGGAGATTGGCGTGGTATAGCACGCAATTTTGTCATGTCAAGGACACCTACTCAAGTAGCAAGTCATGCCCAAAAGTACTTTATCCGGCGTAGTAGTGCTACCCAAAGAAAGAGACGTTCCAGTCTCTTTGACATGGTTACAGATATGGCTTCAGATCCACCTTCAGTGCCAGGAGAACAAGTATTACTGCCACCTTCTGAGAACTCACAACCTGGTAATGCAAAATTGCCTCCATCTTTGAATCTCTCTCTCATGTCAGAATTTGAACCCATGGAAACTACTAAAGAAAATGTGGAAGAGTCCAATAAAAGTATGATGATATCATGTGGATTGGCGCCTGGTTTCTTCCTTGCTTACACACCTGCCTCATTTCCCTTATGGCCATCAGCTTCCTTTGAAGAAGTTAATAGAGCAGAGACATCTCATCAACAAGTCCTCAAGCCGATTCCGATCATTCCAAAGAAACCCGTCAATGTAGATGAACTTGTTGGAATGTCTCATTTAAGTCTCAGAGATTCACAGGTGCTTTCTAGAGAGCCATCCCCACTTTCTTTAAAGTTGCTAGGAGAGCCCTTAAGACAGTCAGCATTCCATGCAAAGGGTCCAGTTGGCTCAGAATTAAGCAATGGTAAGAATAGTATAATTCAAGCAGTCTGA 1014 0.4734 MTRRCSHCSNNGHNSRTCPSRGGGGVRLFGVRLTDGSIIKKSASMGSLSAHYLPSSPNAASPNPGSPSFDPGREPQGYLSDDPAHASSSAHRRGERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVMSRTPTQVASHAQKYFIRRSSATQRKRRSSLFDMVTDMASDPPSVPGEQVLLPPSENSQPGNAKLPPSLNLSLMSEFEPMETTKENVEESNKSMMISCGLAPGFFLAYTPASFPLWPSASFEEVNRAETSHQQVLKPIPIIPKKPVNVDELVGMSHLSLRDSQVLSREPSPLSLKLLGEPLRQSAFHAKGPVGSELSNGKNSIIQAV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1605 337 CDD SANT 101 146 IPR001005 -
Dere11g1605 337 MobiDBLite consensus disorder prediction 168 198 - -
Dere11g1605 337 SMART sant 98 148 IPR001005 -
Dere11g1605 337 ProSiteProfiles Myb-like domain profile. 94 146 IPR001005 -
Dere11g1605 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 150 IPR017930 -
Dere11g1605 337 MobiDBLite consensus disorder prediction 54 100 - -
Dere11g1605 337 Pfam Myb-like DNA-binding domain 101 146 IPR001005 -
Dere11g1605 337 SUPERFAMILY Homeodomain-like 96 150 IPR009057 -
Dere11g1605 337 MobiDBLite consensus disorder prediction 86 100 - -
Dere11g1605 337 MobiDBLite consensus disorder prediction 181 198 - -
Dere11g1605 337 ProSiteProfiles SANT domain profile. 102 150 IPR017884 -
Dere11g1605 337 MobiDBLite consensus disorder prediction 1 18 - -
Dere11g1605 337 Gene3D - 100 151 - -
Dere11g1605 337 PANTHER TRANSCRIPTION FACTOR KUA1 3 237 - -
Dere11g1605 337 MobiDBLite consensus disorder prediction 1 25 - -
Dere11g1605 337 FunFam transcription factor MYB1R1 100 151 - -
Dere11g1605 337 NCBIfam myb-like DNA-binding domain, SHAQKYF class 97 148 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1605 Dere-ChrDere11 29656630 29663318 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere11g1605 Myb_DNA-binding 7.5e-11 CL0123